LOC101971816 (laminin subunit alpha-3) - Rat Genome Database

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Gene: LOC101971816 (laminin subunit alpha-3) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101971816 (Ensembl: LAMA3)
Name: laminin subunit alpha-3 (Ensembl:laminin subunit alpha 3)
RGD ID: 12574410
Description: ENCODES a protein that exhibits signaling receptor binding (inferred); INVOLVED IN cell-cell adhesion (ortholog); hemidesmosome assembly (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH chronic ulcer of skin (ortholog); genetic disease (ortholog); idiopathic pulmonary fibrosis (ortholog); FOUND IN adherens junction (ortholog); hemidesmosome (ortholog); laminin-3 complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Lama3; laminin subunit alpha 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494460,496,309 - 60,694,484 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365503,122,089 - 3,355,319 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365503,121,163 - 3,357,517 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101971816
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494460,496,309 - 60,694,484 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365503,122,089 - 3,355,319 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365503,121,163 - 3,357,517 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LAMA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381823,689,453 - 23,955,066 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1823,689,453 - 23,956,222 (+)EnsemblGRCh38hg38GRCh38
GRCh371821,269,417 - 21,535,030 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361819,523,560 - 19,789,028 (+)NCBINCBI36Build 36hg18NCBI36
Build 341819,707,003 - 19,789,025NCBI
Celera1818,085,885 - 18,351,313 (+)NCBICelera
Cytogenetic Map18q11.2NCBI
HuRef1818,125,049 - 18,390,663 (+)NCBIHuRef
CHM1_11821,196,874 - 21,462,312 (+)NCBICHM1_1
T2T-CHM13v2.01823,883,722 - 24,149,324 (+)NCBIT2T-CHM13v2.0
Lama3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391812,466,806 - 12,716,070 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1812,466,876 - 12,716,070 (+)EnsemblGRCm39 Ensembl
GRCm381812,333,417 - 12,583,013 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1812,333,819 - 12,583,013 (+)EnsemblGRCm38mm10GRCm38
MGSCv371812,492,533 - 12,741,522 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361812,477,560 - 12,726,182 (+)NCBIMGSCv36mm8
Celera1812,567,449 - 12,814,993 (+)NCBICelera
Cytogenetic Map18A1NCBI
cM Map186.2NCBI
Lama3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8183,797,898 - 4,033,021 (+)NCBIGRCr8
mRatBN7.2183,523,168 - 3,751,722 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl183,523,133 - 3,751,353 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx183,744,392 - 3,974,325 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0184,531,960 - 4,761,892 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0183,781,462 - 4,020,783 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0183,704,866 - 3,941,215 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl183,705,916 - 3,940,838 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,712,673 - 3,939,550 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4184,030,463 - 4,121,355 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1184,030,462 - 4,121,355 (+)NCBI
Celera183,569,544 - 3,806,888 (+)NCBICelera
Cytogenetic Map18p13NCBI
Lama3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540211,980,980 - 12,362,143 (+)NCBIChiLan1.0ChiLan1.0
LAMA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21741,120,722 - 41,389,529 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11826,998,373 - 27,082,969 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01816,941,316 - 17,208,363 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11820,750,271 - 20,832,028 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1820,565,649 - 20,831,957 (+)Ensemblpanpan1.1panPan2
LAMA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1764,405,719 - 64,654,910 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl764,406,082 - 64,655,268 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha763,854,180 - 64,103,577 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0764,463,775 - 64,714,403 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl764,463,779 - 64,714,403 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1764,132,606 - 64,382,587 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0764,147,994 - 64,397,958 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0764,453,184 - 64,703,083 (-)NCBIUU_Cfam_GSD_1.0
LAMA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6108,548,715 - 108,805,690 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16108,548,818 - 108,805,700 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26101,146,225 - 101,337,451 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LAMA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11856,580,245 - 56,851,381 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1856,580,700 - 56,850,451 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605031,327,064 - 31,599,113 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lama3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247708,237,085 - 8,482,770 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000006758   ⟹   ENSSTOP00000006043
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365503,122,089 - 3,355,319 (+)Ensembl
RefSeq Acc Id: XM_040274346   ⟹   XP_040130280
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494460,496,309 - 60,694,484 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040130280 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000006043.3
Reference Protein Sequences
RefSeq Acc Id: XP_040130280   ⟸   XM_040274346
RefSeq Acc Id: ENSSTOP00000006043   ⟸   ENSSTOT00000006758
Protein Domains
Laminin EGF-like   Laminin G   Laminin IV type A   Laminin N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006658 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006758.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
  2.60.120.200 UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  Laminin_aI UniProtKB/TrEMBL
  Laminin_dom_II UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  Laminin_G UniProtKB/TrEMBL
  Laminin_IV UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
NCBI Gene Lama3 ENTREZGENE
PANTHER NETRIN-A-RELATED UniProtKB/TrEMBL
  NETRIN/LAMININ-RELATED UniProtKB/TrEMBL
Pfam Laminin_B UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  Laminin_G_1 UniProtKB/TrEMBL
  Laminin_G_2 UniProtKB/TrEMBL
  Laminin_I UniProtKB/TrEMBL
  Laminin_II UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
PRINTS EGFLAMININ UniProtKB/TrEMBL
PROSITE EGF_LAM_1 UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/TrEMBL
  LAM_G_DOMAIN UniProtKB/TrEMBL
  LAMININ_IVA UniProtKB/TrEMBL
  LAMININ_NTER UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_Lam UniProtKB/TrEMBL
  LamB UniProtKB/TrEMBL
  LamG UniProtKB/TrEMBL
  LamNT UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt I3M8H2_ICTTR UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101971816  laminin subunit alpha-3  Lama3  laminin subunit alpha 3  Symbol and/or name change 5135510 APPROVED