LOC101971816 (laminin subunit alpha-3) - Rat Genome Database

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Gene: LOC101971816 (laminin subunit alpha-3) Ictidomys tridecemlineatus
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Symbol: LOC101971816
Name: laminin subunit alpha-3
RGD ID: 12574410
Description: INVOLVED IN cell-cell adhesion (ortholog); endodermal cell differentiation (ortholog); hemidesmosome assembly (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH chronic ulcer of skin (ortholog); idiopathic pulmonary fibrosis (ortholog); junctional epidermolysis bullosa (ortholog); FOUND IN adherens junction (ortholog); basement membrane (ortholog); endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: Lama3; laminin subunit alpha 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494460,496,309 - 60,694,484 (-)NCBI
SpeTri2.0NW_0049365503,121,163 - 3,357,517 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
LOC101971816
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494460,496,309 - 60,694,484 (-)NCBI
SpeTri2.0NW_0049365503,121,163 - 3,357,517 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LAMA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1823,689,453 - 23,956,222 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1823,689,443 - 23,956,222 (+)EnsemblGRCh38hg38GRCh38
GRCh381823,689,443 - 23,955,066 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371821,269,417 - 21,535,030 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361819,523,560 - 19,789,028 (+)NCBINCBI36hg18NCBI36
Build 341819,707,003 - 19,789,025NCBI
Celera1818,085,885 - 18,351,313 (+)NCBI
Cytogenetic Map18q11.2NCBI
HuRef1818,125,049 - 18,390,663 (+)NCBIHuRef
CHM1_11821,196,719 - 21,462,312 (+)NCBICHM1_1
Lama3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391812,466,806 - 12,716,070 (+)NCBIGRCm39mm39
GRCm39 Ensembl1812,466,876 - 12,716,070 (+)Ensembl
GRCm381812,333,417 - 12,583,013 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1812,333,819 - 12,583,013 (+)EnsemblGRCm38mm10GRCm38
MGSCv371812,492,533 - 12,741,522 (+)NCBIGRCm37mm9NCBIm37
MGSCv361812,477,560 - 12,726,182 (+)NCBImm8
Celera1812,567,449 - 12,814,993 (+)NCBICelera
Cytogenetic Map18A1NCBI
cM Map186.2NCBI
Lama3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2183,523,168 - 3,751,722 (+)NCBI
Rnor_6.0 Ensembl183,705,916 - 3,940,838 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0183,704,866 - 3,941,215 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0183,712,673 - 3,939,550 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4184,030,463 - 4,121,355 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1184,030,462 - 4,121,355 (+)NCBI
Celera183,569,544 - 3,806,888 (+)NCBICelera
Cytogenetic Map18p13NCBI
Lama3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540211,980,980 - 12,362,143 (+)NCBIChiLan1.0ChiLan1.0
LAMA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11820,750,271 - 20,832,028 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1820,565,649 - 20,831,957 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01816,941,316 - 17,208,363 (+)NCBIMhudiblu_PPA_v0panPan3
LAMA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1764,405,719 - 64,654,910 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl764,406,082 - 64,655,268 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha763,854,180 - 64,103,577 (-)NCBI
ROS_Cfam_1.0764,463,775 - 64,714,403 (-)NCBI
UMICH_Zoey_3.1764,132,606 - 64,382,587 (-)NCBI
UNSW_CanFamBas_1.0764,147,994 - 64,397,958 (-)NCBI
UU_Cfam_GSD_1.0764,453,184 - 64,703,083 (-)NCBI
LAMA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6108,548,837 - 108,805,693 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16108,548,818 - 108,805,700 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26101,146,225 - 101,337,451 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LAMA3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11856,580,245 - 56,851,381 (-)NCBI
ChlSab1.1 Ensembl1856,580,700 - 56,850,451 (-)Ensembl
Lama3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247708,237,085 - 8,482,770 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021728939   ⟹   XP_021584614
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365503,121,163 - 3,357,517 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040274346   ⟹   XP_040130280
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494460,496,309 - 60,694,484 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040130280 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_021584614   ⟸   XM_021728939
- Sequence:
RefSeq Acc Id: XP_040130280   ⟸   XM_040274346

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006658 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000006043 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006758 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.1490 UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  Laminin_aI UniProtKB/TrEMBL
  Laminin_dom_II UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  Laminin_G UniProtKB/TrEMBL
  Laminin_IV UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
  Laminin_N_sf UniProtKB/TrEMBL
NCBI Gene Lama3 ENTREZGENE
Pfam Laminin_B UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  Laminin_G_1 UniProtKB/TrEMBL
  Laminin_G_2 UniProtKB/TrEMBL
  Laminin_I UniProtKB/TrEMBL
  Laminin_II UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
PROSITE EGF_LAM_1 UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/TrEMBL
  LAM_G_DOMAIN UniProtKB/TrEMBL
  LAMININ_IVA UniProtKB/TrEMBL
  LAMININ_NTER UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_Lam UniProtKB/TrEMBL
  LamB UniProtKB/TrEMBL
  LamG UniProtKB/TrEMBL
  LamNT UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/TrEMBL
UniProt I3M8H2_ICTTR UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101971816  laminin subunit alpha-3  Lama3  laminin subunit alpha 3  Symbol and/or name change 5135510 APPROVED