LOC101956240 (cat eye syndrome critical region protein 2) - Rat Genome Database

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Gene: LOC101956240 (cat eye syndrome critical region protein 2) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101956240 (Ensembl: CECR2)
Name: cat eye syndrome critical region protein 2
RGD ID: 12573896
Description: ENCODES a protein that exhibits ATP-dependent chromatin remodeler activity (inferred); INVOLVED IN cochlea development (ortholog); inner ear receptor cell stereocilium organization (ortholog); neural fold formation (ortholog); ASSOCIATED WITH anencephaly (ortholog); autistic disorder (ortholog); immunodeficiency 51 (ortholog); FOUND IN CERF complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cat eye syndrome chromosome region, candidate 2; Cecr2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945110,399,769 - 110,447,351 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936807498,789 - 542,008 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936807498,491 - 542,503 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
CERF complex  (IEA,ISO)
euchromatin  (IEA)
ISWI-type complex  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101956240
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945110,399,769 - 110,447,351 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936807498,789 - 542,008 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936807498,491 - 542,503 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CECR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382217,359,949 - 17,558,151 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2217,359,949 - 17,558,151 (+)EnsemblGRCh38hg38GRCh38
GRCh372217,840,839 - 18,037,852 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362216,336,630 - 16,413,845 (+)NCBINCBI36Build 36hg18NCBI36
Build 342216,331,181 - 16,408,399NCBI
Celera221,579,045 - 1,656,270 (+)NCBICelera
Cytogenetic Map22q11.1-q11.21NCBI
HuRef221,668,589 - 1,852,277 (+)NCBIHuRef
CHM1_12217,956,236 - 18,033,462 (+)NCBICHM1_1
T2T-CHM13v2.02218,027,656 - 18,225,897 (+)NCBIT2T-CHM13v2.0
Cecr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396120,643,275 - 120,748,152 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6120,643,330 - 120,748,151 (+)EnsemblGRCm39 Ensembl
GRCm386120,666,314 - 120,771,191 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6120,666,369 - 120,771,190 (+)EnsemblGRCm38mm10GRCm38
MGSCv376120,616,439 - 120,721,209 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366120,632,040 - 120,736,810 (+)NCBIMGSCv36mm8
Celera6122,508,426 - 122,613,358 (+)NCBICelera
Cytogenetic Map6F1NCBI
cM Map656.97NCBI
Cecr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84155,562,576 - 155,670,253 (+)NCBIGRCr8
mRatBN7.24153,890,310 - 153,998,078 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4153,890,206 - 153,993,451 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4160,155,571 - 160,258,812 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04155,939,306 - 156,042,549 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04154,562,639 - 154,665,875 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04153,217,521 - 153,327,153 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4153,217,782 - 153,322,564 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04220,306,740 - 220,417,297 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44157,071,991 - 157,174,938 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4142,731,933 - 142,834,618 (+)NCBICelera
Cytogenetic Map4q42NCBI
Cecr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554545,581,981 - 5,640,712 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554545,581,985 - 5,643,685 (+)NCBIChiLan1.0ChiLan1.0
LOC100991444
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22327,682,056 - 27,874,556 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12230,232,447 - 30,424,858 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v022795,525 - 987,645 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12216,229,348 - 16,417,958 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2216,335,754 - 16,412,640 (+)Ensemblpanpan1.1panPan2
CECR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12745,125,909 - 45,193,577 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2745,125,723 - 45,188,890 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha271,489,497 - 1,663,505 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02745,388,681 - 45,563,284 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2745,388,154 - 45,573,256 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12745,318,090 - 45,491,949 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02745,291,363 - 45,465,286 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.027843,709 - 1,017,572 (-)NCBIUU_Cfam_GSD_1.0
CECR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl569,621,959 - 69,740,958 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1569,621,871 - 69,747,730 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2571,997,730 - 72,020,437 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC101714324
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247359,747,550 - 9,896,370 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247359,749,105 - 9,896,328 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000005926   ⟹   ENSSTOP00000005302
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936807498,789 - 542,008 (+)Ensembl
RefSeq Acc Id: XM_021720404   ⟹   XP_021576079
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945110,399,769 - 110,447,351 (-)NCBI
SpeTri2.0NW_004936807498,491 - 542,503 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040281254   ⟹   XP_040137188
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945110,399,769 - 110,447,351 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021576079 (Get FASTA)   NCBI Sequence Viewer  
  XP_040137188 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000005302.3
GenBank Protein KAG3292734 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021576079   ⟸   XM_021720404
- Peptide Label: isoform X1
- UniProtKB: I3M6Y7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040137188   ⟸   XM_040281254
- Peptide Label: isoform X2
- UniProtKB: I3M6Y7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000005302   ⟸   ENSSTOT00000005926
Protein Domains
Bromo


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000005912 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000005926.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.920.10 UniProtKB/TrEMBL
InterPro Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  Bromodomain_CS UniProtKB/TrEMBL
  CECR2 UniProtKB/TrEMBL
NCBI Gene Cecr2 ENTREZGENE
PANTHER CAT EYE SYNDROME CRITICAL REGION PROTEIN 2 UniProtKB/TrEMBL
  PTHR47092 UniProtKB/TrEMBL
Pfam Bromodomain UniProtKB/TrEMBL
PRINTS BROMODOMAIN UniProtKB/TrEMBL
PROSITE BROMODOMAIN_1 UniProtKB/TrEMBL
  BROMODOMAIN_2 UniProtKB/TrEMBL
SMART BROMO UniProtKB/TrEMBL
Superfamily-SCOP SSF47370 UniProtKB/TrEMBL
UniProt I3M6Y7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-13 LOC101956240  cat eye syndrome critical region protein 2  Cecr2  cat eye syndrome chromosome region, candidate 2  Symbol and/or name change 5135510 APPROVED