Rtf1 (RTF1 homolog, Paf1/RNA polymerase II complex component) - Rat Genome Database

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Gene: Rtf1 (RTF1 homolog, Paf1/RNA polymerase II complex component) Ictidomys tridecemlineatus
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Symbol: Rtf1
Name: RTF1 homolog, Paf1/RNA polymerase II complex component
RGD ID: 12573354
Description: ENCODES a protein that exhibits single-stranded DNA binding (ortholog); INVOLVED IN blastocyst growth (ortholog); endodermal cell fate commitment (ortholog); histone H3-K4 trimethylation (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription elongation pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colon cancer (ortholog); FOUND IN Cdc73/Paf1 complex (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: RNA polymerase-associated protein RTF1 homolog; Rtf1, Paf1/RNA polymerase II complex component, homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864086,921,991 - 86,981,499 (+)NCBI
SpeTri2.0NW_0049364714,770,060 - 4,829,562 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Rtf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864086,921,991 - 86,981,499 (+)NCBI
SpeTri2.0NW_0049364714,770,060 - 4,829,562 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RTF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1541,408,408 - 41,483,563 (+)EnsemblGRCh38hg38GRCh38
GRCh381541,417,104 - 41,483,563 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371541,709,302 - 41,775,761 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361539,496,608 - 39,563,049 (+)NCBINCBI36hg18NCBI36
Build 341539,496,643 - 39,562,470NCBI
Celera1518,477,273 - 18,543,722 (+)NCBI
Cytogenetic Map15q15.1NCBI
HuRef1518,557,815 - 18,624,156 (+)NCBIHuRef
CHM1_11541,827,411 - 41,894,383 (+)NCBICHM1_1
Rtf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392119,505,549 - 119,565,888 (+)NCBIGRCm39mm39
GRCm39 Ensembl2119,505,549 - 119,565,888 (+)Ensembl
GRCm382119,675,068 - 119,735,407 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2119,675,068 - 119,735,407 (+)EnsemblGRCm38mm10GRCm38
MGSCv372119,500,804 - 119,561,143 (+)NCBIGRCm37mm9NCBIm37
MGSCv362119,366,509 - 119,426,868 (+)NCBImm8
Celera2120,832,949 - 120,891,714 (+)NCBICelera
Cytogenetic Map2E5NCBI
Rtf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23106,659,363 - 106,718,970 (+)NCBI
Rnor_6.0 Ensembl3111,478,382 - 111,537,941 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03111,478,350 - 111,537,941 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03118,026,851 - 118,086,227 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43106,190,937 - 106,250,416 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13106,086,988 - 106,144,350 (+)NCBI
Celera3105,570,654 - 105,629,853 (+)NCBICelera
Cytogenetic Map3q35NCBI
Rtf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554168,237,439 - 8,293,802 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554168,237,439 - 8,293,802 (+)NCBIChiLan1.0ChiLan1.0
RTF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11538,599,107 - 38,664,968 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1538,599,163 - 38,662,100 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01520,355,927 - 20,424,153 (+)NCBIMhudiblu_PPA_v0panPan3
RTF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1308,468,001 - 8,524,712 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl308,467,761 - 8,522,874 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha308,527,100 - 8,583,598 (+)NCBI
ROS_Cfam_1.0308,602,619 - 8,658,990 (+)NCBI
UMICH_Zoey_3.1308,524,088 - 8,580,315 (+)NCBI
UNSW_CanFamBas_1.0308,631,610 - 8,687,743 (+)NCBI
UU_Cfam_GSD_1.0308,762,810 - 8,819,481 (+)NCBI
RTF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1129,886,800 - 129,942,982 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11129,886,798 - 129,942,845 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21144,958,162 - 145,015,973 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RTF1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12641,523,610 - 41,589,014 (-)NCBI
ChlSab1.1 Ensembl2641,522,542 - 41,588,948 (-)Ensembl
Rtf1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248048,588,751 - 8,649,180 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005316435   ⟹   XP_005316492
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864086,921,991 - 86,981,499 (+)NCBI
SpeTri2.0NW_0049364714,770,060 - 4,829,562 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021725894   ⟹   XP_021581569
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864086,940,653 - 86,981,499 (+)NCBI
SpeTri2.0NW_0049364714,788,716 - 4,829,562 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005316492 (Get FASTA)   NCBI Sequence Viewer  
  XP_021581569 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005316492   ⟸   XM_005316435
- Peptide Label: isoform X1
- UniProtKB: I3MBH4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021581569   ⟸   XM_021725894
- Peptide Label: isoform X2
- Sequence:
Protein Domains
Plus3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008346 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000007490 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008357 UniProtKB/TrEMBL
Gene3D-CATH 2.170.260.30 UniProtKB/TrEMBL
InterPro Plus-3_dom UniProtKB/TrEMBL
  Plus3-like_sf UniProtKB/TrEMBL
NCBI Gene Rtf1 ENTREZGENE
Pfam Plus-3 UniProtKB/TrEMBL
PROSITE PLUS3 UniProtKB/TrEMBL
SMART Plus3 UniProtKB/TrEMBL
Superfamily-SCOP SSF159042 UniProtKB/TrEMBL
UniProt I3MBH4 ENTREZGENE, UniProtKB/TrEMBL