Tpp1 (tripeptidyl peptidase 1) - Rat Genome Database

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Gene: Tpp1 (tripeptidyl peptidase 1) Ictidomys tridecemlineatus
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Symbol: Tpp1
Name: tripeptidyl peptidase 1
RGD ID: 12573284
Description: ENCODES a protein that exhibits endopeptidase activity (ortholog); lysophosphatidic acid binding (ortholog); peptidase activity (ortholog); INVOLVED IN bone resorption (ortholog); epithelial cell differentiation (ortholog); lysosomal protein catabolic process (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); autosomal recessive spinocerebellar ataxia 7 (ortholog); epilepsy (ortholog); FOUND IN Golgi apparatus (ortholog); lysosome (ortholog); membrane raft (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: tripeptidyl-peptidase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494755,998,722 - 56,005,618 (+)NCBI
SpeTri2.0NW_004936842669,869 - 676,706 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Tpp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494755,998,722 - 56,005,618 (+)NCBI
SpeTri2.0NW_004936842669,869 - 676,706 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TPP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl116,612,768 - 6,619,448 (-)EnsemblGRCh38hg38GRCh38
GRCh38116,612,768 - 6,619,422 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37116,633,999 - 6,640,653 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36116,590,573 - 6,597,268 (-)NCBINCBI36hg18NCBI36
Celera116,753,063 - 6,759,757 (-)NCBI
Cytogenetic Map11p15.4NCBI
HuRef116,292,929 - 6,299,623 (-)NCBIHuRef
CHM1_1116,632,898 - 6,639,593 (-)NCBICHM1_1
Tpp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397105,394,018 - 105,401,489 (-)NCBIGRCm39mm39
GRCm39 Ensembl7105,394,018 - 105,401,442 (-)Ensembl
GRCm387105,744,811 - 105,752,282 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7105,744,811 - 105,752,235 (-)EnsemblGRCm38mm10GRCm38
MGSCv377112,893,361 - 112,900,721 (-)NCBIGRCm37mm9NCBIm37
MGSCv367105,618,668 - 105,626,028 (-)NCBImm8
Celera7106,016,147 - 106,023,505 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map755.97NCBI
Tpp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21160,097,984 - 160,104,108 (-)NCBI
Rnor_6.0 Ensembl1170,588,035 - 170,594,168 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01170,588,036 - 170,594,159 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01177,592,725 - 177,600,011 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41163,490,394 - 163,496,517 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11163,585,870 - 163,591,994 (-)NCBI
Celera1158,029,903 - 158,035,938 (-)NCBICelera
Cytogenetic Map1q32NCBI
Tpp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541422,324,856 - 22,330,912 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541422,324,847 - 22,330,912 (-)NCBIChiLan1.0ChiLan1.0
TPP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1116,427,516 - 6,434,222 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl116,427,522 - 6,434,222 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0116,744,815 - 6,751,556 (-)NCBIMhudiblu_PPA_v0panPan3
TPP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12129,921,764 - 29,926,974 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2129,921,764 - 29,926,986 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2129,623,623 - 29,628,832 (-)NCBI
ROS_Cfam_1.02130,747,948 - 30,753,157 (-)NCBI
UMICH_Zoey_3.12130,068,707 - 30,073,915 (-)NCBI
UNSW_CanFamBas_1.02130,234,365 - 30,239,567 (-)NCBI
UU_Cfam_GSD_1.02130,429,691 - 30,434,901 (-)NCBI
TPP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl93,135,642 - 3,143,408 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.193,135,580 - 3,143,408 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.293,792,812 - 3,800,637 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TPP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1158,205,999 - 58,211,743 (+)NCBI
ChlSab1.1 Ensembl158,206,072 - 58,210,945 (+)Ensembl
Vero_WHO_p1.0NW_023666038156,031,787 - 156,038,501 (+)NCBI
Tpp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248178,104,934 - 8,111,049 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005341119   ⟹   XP_005341176
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494755,998,722 - 56,005,618 (+)NCBI
SpeTri2.0NW_004936842669,869 - 676,706 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040284841   ⟹   XP_040140775
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494755,998,722 - 56,005,618 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005341176 (Get FASTA)   NCBI Sequence Viewer  
  XP_040140775 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3285826 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005341176   ⟸   XM_005341119
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040140775   ⟸   XM_040284841
- Peptide Label: isoform X2
Protein Domains
Peptidase S53


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011638 ENTREZGENE
Ensembl Protein ENSSTOP00000010446 ENTREZGENE
NCBI Gene Tpp1 ENTREZGENE