Ago2 (argonaute RISC catalytic component 2) - Rat Genome Database

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Gene: Ago2 (argonaute RISC catalytic component 2) Ictidomys tridecemlineatus
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Symbol: Ago2
Name: argonaute RISC catalytic component 2
RGD ID: 12572776
Description: ENCODES a protein that exhibits Hsp70 protein binding (ortholog); Hsp90 protein binding (ortholog); RISC complex binding (ortholog); INVOLVED IN cellular response to calcium ion (ortholog); miRNA metabolic process (ortholog); miRNA processing (ortholog); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH alcohol dependence (ortholog); Cocaine-Related Disorders (ortholog); genetic disease (ortholog); FOUND IN chromatoid body (ortholog); cytoplasm (ortholog); cytoplasmic stress granule (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: argonaute 2, RISC catalytic component
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053033,202,184 - 3,264,488 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647010,628,128 - 10,680,106 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647010,641,109 - 10,690,587 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ago2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053033,202,184 - 3,264,488 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647010,628,128 - 10,680,106 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647010,641,109 - 10,690,587 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AGO2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388140,520,156 - 140,642,313 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8140,520,156 - 140,635,633 (-)EnsemblGRCh38hg38GRCh38
GRCh378141,530,255 - 141,645,732 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368141,610,446 - 141,714,827 (-)NCBINCBI36Build 36hg18NCBI36
Build 348141,610,446 - 141,714,827NCBI
Celera8137,710,380 - 137,814,765 (-)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8136,853,198 - 136,907,219 (-)NCBIHuRef
CHM1_18141,581,910 - 141,685,882 (-)NCBICHM1_1
T2T-CHM13v2.08141,640,512 - 141,762,332 (-)NCBIT2T-CHM13v2.0
Ago2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391572,967,693 - 73,056,777 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1572,967,693 - 73,056,784 (-)EnsemblGRCm39 Ensembl
GRCm381573,101,625 - 73,184,947 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1573,095,844 - 73,184,935 (-)EnsemblGRCm38mm10GRCm38
MGSCv371572,932,055 - 73,015,377 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361572,934,117 - 73,012,065 (-)NCBIMGSCv36mm8
Celera1574,601,857 - 74,646,651 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1533.92NCBI
Ago2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87106,907,209 - 106,994,124 (-)NCBIGRCr8
mRatBN7.27105,018,202 - 105,105,118 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7105,029,120 - 105,104,974 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.07114,339,607 - 114,377,277 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7114,339,434 - 114,380,613 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07114,274,582 - 114,312,135 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47110,827,857 - 110,865,589 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17110,862,086 - 110,899,819 (-)NCBI
Celera7101,439,261 - 101,476,737 (-)NCBICelera
Cytogenetic Map7q34NCBI
Ago2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546114,205,748 - 14,253,861 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546114,194,268 - 14,260,949 (-)NCBIChiLan1.0ChiLan1.0
AGO2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27157,913,911 - 158,030,054 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18133,444,339 - 133,560,536 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08137,192,037 - 137,308,059 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18140,278,610 - 140,361,124 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8140,287,647 - 140,361,125 (-)Ensemblpanpan1.1panPan2
AGO2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11335,169,243 - 35,230,252 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1335,180,912 - 35,268,577 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1335,028,442 - 35,140,440 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01335,564,998 - 35,666,115 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1335,565,198 - 35,666,187 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11335,274,354 - 35,386,196 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01335,364,327 - 35,476,164 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01335,795,131 - 35,895,912 (-)NCBIUU_Cfam_GSD_1.0
AGO2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl42,919,511 - 3,015,334 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.142,966,794 - 3,012,388 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.242,362,700 - 2,405,419 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AGO2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18134,761,651 - 134,855,971 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8134,767,182 - 134,823,070 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660395,263,683 - 5,390,650 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ago2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473515,785,114 - 15,842,435 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473515,785,831 - 15,853,854 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000008130   ⟹   ENSSTOP00000007282
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647010,640,740 - 10,679,237 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000043233   ⟹   ENSSTOP00000029580
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647010,628,128 - 10,680,106 (+)Ensembl
RefSeq Acc Id: XM_005316126   ⟹   XP_005316183
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053033,209,418 - 3,264,488 (+)NCBI
SpeTri2.0NW_00493647010,641,109 - 10,690,587 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040293602   ⟹   XP_040149536
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053033,202,184 - 3,264,488 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005316183 (Get FASTA)   NCBI Sequence Viewer  
  XP_040149536 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000007282.3
  ENSSTOP00000029580.1
GenBank Protein KAG3273527 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005316183   ⟸   XM_005316126
- UniProtKB: A0A287D7Q5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040149536   ⟸   XM_040293602
- UniProtKB: A0A287D7Q5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000007282   ⟸   ENSSTOT00000008130
RefSeq Acc Id: ENSSTOP00000029580   ⟸   ENSSTOT00000043233
Protein Domains
PAZ   Piwi


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008113 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008130.3 UniProtKB/TrEMBL
  ENSSTOT00000043233.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.10 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
  paz domain UniProtKB/TrEMBL
InterPro AGO2 UniProtKB/TrEMBL
  ArgoL1 UniProtKB/TrEMBL
  ArgoL2 UniProtKB/TrEMBL
  Argonaute_Mid_dom UniProtKB/TrEMBL
  Argonaute_N UniProtKB/TrEMBL
  PAZ_dom UniProtKB/TrEMBL
  PAZ_dom_sf UniProtKB/TrEMBL
  Piwi UniProtKB/TrEMBL
  Piwi_ago-like UniProtKB/TrEMBL
  RNaseH-like_sf UniProtKB/TrEMBL
  RNaseH_sf UniProtKB/TrEMBL
NCBI Gene Ago2 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C UniProtKB/TrEMBL
  PROTEIN ARGONAUTE-2 UniProtKB/TrEMBL
Pfam ArgoL1 UniProtKB/TrEMBL
  ArgoL2 UniProtKB/TrEMBL
  ArgoMid UniProtKB/TrEMBL
  ArgoN UniProtKB/TrEMBL
  PAZ UniProtKB/TrEMBL
  Piwi UniProtKB/TrEMBL
PROSITE PAZ UniProtKB/TrEMBL
  PIWI UniProtKB/TrEMBL
SMART DUF1785 UniProtKB/TrEMBL
  PAZ UniProtKB/TrEMBL
  Piwi UniProtKB/TrEMBL
Superfamily-SCOP SSF101690 UniProtKB/TrEMBL
  SSF53098 UniProtKB/TrEMBL
UniProt A0A287D7Q5 ENTREZGENE, UniProtKB/TrEMBL
  I3MB33_ICTTR UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-11-29 Ago2  argonaute RISC catalytic component 2    argonaute 2, RISC catalytic component  Symbol and/or name change 5135510 APPROVED