Fbxo28 (F-box protein 28) - Rat Genome Database

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Gene: Fbxo28 (F-box protein 28) Ictidomys tridecemlineatus
Analyze
Symbol: Fbxo28
Name: F-box protein 28
RGD ID: 12571590
Description: ENCODES a protein that exhibits identical protein binding (inferred); INVOLVED IN protein polyubiquitination (inferred); ASSOCIATED WITH developmental and epileptic encephalopathy 100 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN kinetochore (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: F-box only protein 28
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934453,623,042 - 53,656,308 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365261,090,706 - 1,124,639 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365261,090,983 - 1,124,256 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
kinetochore  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Fbxo28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934453,623,042 - 53,656,308 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365261,090,706 - 1,124,639 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365261,090,983 - 1,124,256 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXO28
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381224,114,111 - 224,162,047 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1224,114,111 - 224,162,047 (+)EnsemblGRCh38hg38GRCh38
GRCh371224,301,813 - 224,349,749 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361222,368,436 - 222,413,869 (+)NCBINCBI36Build 36hg18NCBI36
Build 341220,608,547 - 220,653,981NCBI
Celera1197,492,695 - 197,540,680 (+)NCBICelera
Cytogenetic Map1q42.11NCBI
HuRef1194,822,576 - 194,870,477 (+)NCBIHuRef
CHM1_11225,574,426 - 225,622,384 (+)NCBICHM1_1
T2T-CHM13v2.01223,303,343 - 223,351,289 (+)NCBIT2T-CHM13v2.0
Fbxo28
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391182,140,667 - 182,169,171 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1182,140,667 - 182,169,194 (-)EnsemblGRCm39 Ensembl
GRCm381182,313,102 - 182,341,606 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1182,313,102 - 182,341,629 (-)EnsemblGRCm38mm10GRCm38
MGSCv371184,243,233 - 184,271,737 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361184,149,777 - 184,178,281 (-)NCBIMGSCv36mm8
Celera1189,355,654 - 189,384,015 (-)NCBICelera
Cytogenetic Map1H5NCBI
cM Map184.93NCBI
Fbxo28
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81396,527,667 - 96,553,138 (-)NCBIGRCr8
mRatBN7.21393,995,993 - 94,021,464 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1393,995,996 - 94,021,464 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1396,501,261 - 96,526,734 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01397,901,180 - 97,926,651 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01395,083,362 - 95,108,833 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013100,715,257 - 100,740,728 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13100,715,260 - 100,740,728 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013105,649,127 - 105,674,598 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41398,317,300 - 98,342,771 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11398,505,829 - 98,531,709 (-)NCBI
Celera1393,529,672 - 93,555,143 (-)NCBICelera
Cytogenetic Map13q26NCBI
Fbxo28
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555201,169,447 - 1,198,426 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555201,169,624 - 1,198,277 (-)NCBIChiLan1.0ChiLan1.0
FBXO28
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2125,365,776 - 25,408,922 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1125,316,694 - 25,364,749 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01199,582,552 - 199,630,575 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11204,593,073 - 204,638,769 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1204,593,073 - 204,638,769 (+)Ensemblpanpan1.1panPan2
FBXO28
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1740,168,914 - 40,202,545 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl740,172,641 - 40,202,722 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha739,651,029 - 39,684,669 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0740,003,566 - 40,037,149 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl740,003,568 - 40,037,179 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1739,844,383 - 39,877,969 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0739,852,007 - 39,885,597 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0740,120,634 - 40,154,230 (-)NCBIUU_Cfam_GSD_1.0
FBXO28
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1019,936,244 - 19,968,956 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11019,936,217 - 19,968,960 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21024,574,132 - 24,606,624 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FBXO28
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1255,617,311 - 5,661,206 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl255,621,596 - 5,661,183 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660555,805,279 - 5,849,169 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbxo28
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248355,835,767 - 5,864,328 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248355,835,906 - 5,863,972 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005326515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000009416   ⟹   ENSSTOP00000008445
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365261,090,706 - 1,124,639 (+)Ensembl
RefSeq Acc Id: XM_005326515   ⟹   XP_005326572
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934453,623,042 - 53,656,308 (-)NCBI
SpeTri2.0NW_0049365261,090,983 - 1,124,256 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005326572 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000008445.3
GenBank Protein KAG3258028 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005326572   ⟸   XM_005326515
- UniProtKB: I3MDI1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000008445   ⟸   ENSSTOT00000009416
Protein Domains
F-box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009419 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009416.3 UniProtKB/TrEMBL
InterPro F-box-like_dom_sf UniProtKB/TrEMBL
  F-box_dom UniProtKB/TrEMBL
  FBXO28 UniProtKB/TrEMBL
NCBI Gene Fbxo28 ENTREZGENE
PANTHER F-BOX ONLY PROTEIN 28 UniProtKB/TrEMBL
  PTHR13252 UniProtKB/TrEMBL
Pfam F-box UniProtKB/TrEMBL
PROSITE FBOX UniProtKB/TrEMBL
Superfamily-SCOP SSF81383 UniProtKB/TrEMBL
UniProt I3MDI1 ENTREZGENE, UniProtKB/TrEMBL