Serinc2 (serine incorporator 2) - Rat Genome Database

Name: Serinc2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Serinc2 (serine incorporator 2) Ictidomys tridecemlineatus

Analyze

Symbol:

Serinc2

Name:

serine incorporator 2

RGD ID:

12571402

Description:

INVOLVED IN phosphatidylserine metabolic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SERINC2 (serine incorporator 2)	NCBI	Ortholog
Mus musculus (house mouse):	Serinc2 (serine incorporator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Serinc2 (serine incorporator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Serinc2 (serine incorporator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SERINC2 (serine incorporator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SERINC2 (serine incorporator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SERINC2 (serine incorporator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SERINC2 (serine incorporator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Serinc2 (serine incorporator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	48,796,095 - 48,814,379 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	14,620,359 - 14,639,195 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	14,622,980 - 14,639,159 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

phosphatidylserine metabolic process (ISO)

Cellular Component

membrane (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Serinc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	48,796,095 - 48,814,379 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	14,620,359 - 14,639,195 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	14,622,980 - 14,639,159 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SERINC2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	31,409,777 - 31,434,678 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	31,409,565 - 31,434,680 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	31,882,624 - 31,907,525 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	31,658,550 - 31,680,112 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	30,143,213 - 30,168,046 (+)	NCBI		Celera
Cytogenetic Map	1	p35.2	NCBI
HuRef	1	29,989,453 - 30,017,892 (+)	NCBI		HuRef
CHM1_1	1	31,998,320 - 32,023,476 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	31,262,102 - 31,291,896 (+)	NCBI		T2T-CHM13v2.0

Serinc2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	130,147,289 - 130,172,993 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	130,147,288 - 130,172,998 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	130,253,495 - 130,279,218 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	130,253,495 - 130,279,205 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	129,930,741 - 129,952,830 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	129,755,801 - 129,777,857 (-)	NCBI		MGSCv36	mm8
Celera	4	128,586,340 - 128,608,383 (-)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI
cM Map	4	63.43	NCBI

Serinc2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	147,876,477 - 147,898,797 (-)	NCBI		GRCr8
mRatBN7.2	5	142,592,308 - 142,614,628 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	142,592,309 - 142,618,364 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	145,291,696 - 145,314,017 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	147,061,508 - 147,083,829 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	147,058,726 - 147,080,977 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	148,470,060 - 148,492,232 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	148,470,061 - 148,492,232 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	152,187,837 - 152,210,009 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	149,279,136 - 149,301,805 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	149,289,176 - 149,312,129 (-)	NCBI
Celera	5	141,059,502 - 141,081,693 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Serinc2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	9,892,657 - 9,915,018 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	9,905,152 - 9,914,943 (+)	NCBI	ChiLan1.0	ChiLan1.0

SERINC2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	195,399,238 - 195,443,129 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	194,518,301 - 194,562,195 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	30,689,645 - 30,714,325 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	31,714,162 - 31,734,906 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	31,710,291 - 31,734,906 (+)	Ensembl	panpan1.1		panPan2

SERINC2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	69,600,349 - 69,618,004 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	69,600,360 - 69,620,946 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	66,179,079 - 66,196,727 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	70,164,791 - 70,182,451 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	70,164,797 - 70,185,345 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	67,000,805 - 67,018,460 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	67,997,271 - 68,014,928 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	68,996,787 - 69,014,444 (-)	NCBI		UU_Cfam_GSD_1.0

SERINC2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	87,992,827 - 88,017,130 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	87,992,933 - 88,017,141 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	81,673,720 - 81,680,123 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SERINC2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	101,401,526 - 101,423,852 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	101,401,222 - 101,423,599 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	15,255,491 - 15,289,647 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Serinc2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	14,741,902 - 14,766,936 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	14,744,347 - 14,763,423 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005317727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040288269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000001504 ⟹ ENSSTOP00000001346

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936474	14,620,359 - 14,638,719 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000034921 ⟹ ENSSTOP00000027245

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936474	14,622,980 - 14,639,195 (+)	Ensembl

RefSeq Acc Id:

XM_005317727 ⟹ XP_005317784

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	48,798,194 - 48,813,944 (+)	NCBI
SpeTri2.0	NW_004936474	14,622,980 - 14,639,159 (+)	NCBI

Sequence:

show sequence

CCGCCATGGGCGCCTGCCTGGGCGCCTGCTCCCTGATCGGCTGCGCCTCCTGCCTCTGTGGCAC
GGCTCCCTGCCTCCTGTGCGGCTGCTGCCCCGCCAGCCGCAACTCCACGGTGAGCCGCCTGGTC
TTCACGGGCTTCCTGTTCCTGGGCGTGCTGGTGTCTGTCGTCATGCTGAGCCCCGGCGTGGAGA
GTCAGCTGCACAAGCTGCCCTGGGTGTGTGAGGAGGAGGCCGGGAACCCCATGGTCCCTCAGGG
CCACATCAACTGTGGCTCCCTGCTGGGCTTCCGCGCTGTCTACCGCATGTGCTTCTCCACCACG
GCCTTCTTCTTCCTGTTCACCCTGCTCATGATGTGTGTGCGCAGCAGCCGGGACCCCAGGGCCG
CCATCCAGAACGGGTTTTGGTTCTTTAAGTTCCTGGTCCTCGTGGGCATCACCGTGGGTGCCTT
CTACATCCCTAGTGGCTCCTTCTCCAAGATCTGGTTCTACTTCGGCGCCGTGGGCTCCTTCCTC
TTCATCCTCATCCAGCTGGTCCTGCTCATCGACTTCGCGCACTCCTGGAACCAGCGGTGGCTGT
GCAAGGCTGAGGAGTGCGACTCCCGCGCCTGGTACGCAGGCCTCTTCTTCTTCACCTTCCTCTT
CTACGCGCTCTCCATCGCGGCCGTGACGCTGATGTTCATCTACTACACGCATCCCGGAGACTGC
CACGAGGGCAAGGTCTTCATCGGCCTCAACCTCACCTTCTGCTTCTGCCTGTCCATTGTCGCTG
TCCTGCCCAAGGTCCAGGACGCCCAGCCCAACTCTGGGCTGCTGCAGGCCTCTGTCGTCTCGCT
CTACACCATGTTTGTCACCTGGTCCGCCCTCTCCAATGTCCCTGACCAGAAGTGCAACCCTCAC
TTGCTGACCCGCTTGGACAACGCTACGGTCCTGGCAGGCCCCGAGGGCTACGAGAGCCAGTGGT
GGGACGCCCCCAGCATCGTGGGCCTCATCATCTTCATCCTGTGCACCCTCTTCATCAGTGTGCG
CTCCTCAGACCACCGGCAGGTAAACAGTCTGATGCAGACAGAGGAGTGCCCTGCCGGGCCGGAG
GTCATGCAGCAGCAGCAGCAGATGGAGGTCTGTGAGGGCCGGGCCTTCGACAATGAGCAGGACG
GTGTCACCTACAGCTACTCCTTCTTCCACTTCTGCCTGGTGCTGGCCTCCTTGCACATCATGAT
GACACTCACCAACTGGTACAGACCCGGAGAGACGCAGACGATGGTCAGCACGTGGACTGCCGTG
TGGGTGAAGATCTGCGCCAGCTGGGCAGGGCTGTTCCTCTACCTGTGGACCCTGGTGGCCCCCC
TGCTCCTGCCCAACCGTGACTTCAGCTGAGGAAGCCCCCGGAGCCTCCCCACTTCGTGCCTCAG
GGCTCACCGGCAGCCACCCTGCCGCCTCCCCACCCACCCTCCTCCAGGCCTGGCCTGAGTGGCT
GTCCTCCCGTCCTAGTGCCCTCAGGGTCCAGGAAGCACGGAGCTCACACCTGTGCCCCACCTGG
CCACCACCCTGGGTCTCAGAGCCGCCTCTTCCTTCCCTGACCCCAGTGACCCAGGGTCACCCTG
GGGACAAAACATCCCCTTGTTCCCAGGCTGCCCAGAGGGGACTTAAGGGGAGAGCAGCTCAGAG
CTGTTCAGAGGGCAGTGAGCACGCGCCATCTTGGGTGCCTGGCACCGAGGCCGGTGTTCCTGCC
CGTGCGTTATCCCCTTCCTGGACCATGTGCCTTATGAGTCTCTAAGACTTTGCCCAATAAACAC
GCCCGAGTGTGTGCCTTCCTA

hide sequence

RefSeq Acc Id:

XM_040288269 ⟹ XP_040144203

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	48,796,095 - 48,814,379 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005317784	(Get FASTA)	NCBI Sequence Viewer
	XP_040144203	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000001346.3
	ENSSTOP00000027245.1
GenBank Protein	KAG3282594	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005317784 ⟸ XM_005317727
- Peptide Label:	isoform X2
- UniProtKB:	A0A287D175 (UniProtKB/TrEMBL), I3LYP8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGACLGACSLIGCASCLCGTAPCLLCGCCPASRNSTVSRLVFTGFLFLGVLVSVVMLSPGVESQ LHKLPWVCEEEAGNPMVPQGHINCGSLLGFRAVYRMCFSTTAFFFLFTLLMMCVRSSRDPRAAI QNGFWFFKFLVLVGITVGAFYIPSGSFSKIWFYFGAVGSFLFILIQLVLLIDFAHSWNQRWLCK AEECDSRAWYAGLFFFTFLFYALSIAAVTLMFIYYTHPGDCHEGKVFIGLNLTFCFCLSIVAVL PKVQDAQPNSGLLQASVVSLYTMFVTWSALSNVPDQKCNPHLLTRLDNATVLAGPEGYESQWWD APSIVGLIIFILCTLFISVRSSDHRQVNSLMQTEECPAGPEVMQQQQQMEVCEGRAFDNEQDGV TYSYSFFHFCLVLASLHIMMTLTNWYRPGETQTMVSTWTAVWVKICASWAGLFLYLWTLVAPLL LPNRDFS hide sequence

RefSeq Acc Id:	XP_040144203 ⟸ XM_040288269
- Peptide Label:	isoform X1
- UniProtKB:	I3LYP8 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000027245 ⟸ ENSSTOT00000034921

RefSeq Acc Id:

ENSSTOP00000001346 ⟸ ENSSTOT00000001504

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000001504	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000001504.3	UniProtKB/TrEMBL
	ENSSTOT00000034921.1	UniProtKB/TrEMBL
InterPro	TDE1/TMS	UniProtKB/TrEMBL
NCBI Gene	Serinc2	ENTREZGENE
PANTHER	PTHR10383	UniProtKB/TrEMBL
	PTHR10383:SF22	UniProtKB/TrEMBL
Pfam	Serinc	UniProtKB/TrEMBL
UniProt	A0A287D175	ENTREZGENE, UniProtKB/TrEMBL
	I3LYP8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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