Ccdc154 (coiled-coil domain containing 154) - Rat Genome Database

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Gene: Ccdc154 (coiled-coil domain containing 154) Ictidomys tridecemlineatus
Analyze
Symbol: Ccdc154
Name: coiled-coil domain containing 154
RGD ID: 12570090
Description: INVOLVED IN bone mineralization involved in bone maturation (ortholog); bone remodeling (ortholog); bone resorption (ortholog); ASSOCIATED WITH autosomal recessive osteopetrosis 1 (ortholog); epilepsy (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 154
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,233,562 - 104,241,590 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366942,468,281 - 2,475,487 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366942,468,281 - 2,475,901 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ccdc154
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,233,562 - 104,241,590 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366942,468,281 - 2,475,487 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366942,468,281 - 2,475,901 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC154
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,434,383 - 1,444,556 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl161,434,383 - 1,444,556 (-)EnsemblGRCh38hg38GRCh38
GRCh37161,484,384 - 1,494,557 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,423,396 - 1,434,858 (-)NCBINCBI36Build 36hg18NCBI36
Celera161,696,988 - 1,707,090 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef161,410,857 - 1,420,959 (-)NCBIHuRef
CHM1_1161,484,319 - 1,494,490 (-)NCBICHM1_1
T2T-CHM13v2.0161,449,044 - 1,459,216 (-)NCBIT2T-CHM13v2.0
Ccdc154
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391725,381,142 - 25,390,887 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1725,381,435 - 25,390,887 (+)EnsemblGRCm39 Ensembl
GRCm381725,162,175 - 25,171,913 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,162,461 - 25,171,913 (+)EnsemblGRCm38mm10GRCm38
MGSCv371725,299,406 - 25,308,858 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361724,890,061 - 24,899,513 (+)NCBIMGSCv36mm8
MGSCv361724,353,464 - 24,362,916 (+)NCBIMGSCv36mm8
Celera1725,692,021 - 25,701,427 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.53NCBI
Ccdc154
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,681,938 - 14,691,757 (+)NCBIGRCr8
mRatBN7.21014,177,271 - 14,187,378 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1014,177,278 - 14,187,253 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01014,518,240 - 14,529,920 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,519,164 - 14,528,277 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01014,333,873 - 14,343,771 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41014,405,553 - 14,415,281 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1013,849,873 - 13,861,554 (+)NCBICelera
Cytogenetic Map10q12NCBI
Ccdc154
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544215,793,049 - 15,800,364 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544215,792,593 - 15,800,410 (+)NCBIChiLan1.0ChiLan1.0
CCDC154
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2181,696,340 - 1,706,659 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1165,483,690 - 5,494,011 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01654,158 - 64,522 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1161,488,751 - 1,498,392 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl161,488,750 - 1,498,293 (-)Ensemblpanpan1.1panPan2
CCDC154
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,356,234 - 39,364,053 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl639,357,273 - 39,364,740 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,624,500 - 40,632,188 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,702,775 - 39,710,470 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,704,510 - 39,710,453 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1639,379,769 - 39,390,268 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0639,352,227 - 39,359,921 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,830,637 - 39,838,332 (+)NCBIUU_Cfam_GSD_1.0
CCDC154
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl340,422,892 - 40,429,844 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1340,420,339 - 40,429,787 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2341,885,460 - 41,892,971 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC154
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.151,323,406 - 1,333,676 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl51,322,933 - 1,333,122 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606829,745,273 - 29,763,693 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc154
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249132,134,780 - 2,141,780 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249132,134,763 - 2,142,446 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000003546   ⟹   ENSSTOP00000003176
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366942,468,281 - 2,475,456 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000032427   ⟹   ENSSTOP00000028871
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366942,468,281 - 2,475,487 (+)Ensembl
RefSeq Acc Id: XM_040278116   ⟹   XP_040134050
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344104,233,562 - 104,241,590 (-)NCBI
RefSeq Acc Id: XM_040278117   ⟹   XP_040134051
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344104,233,562 - 104,241,590 (-)NCBI
RefSeq Acc Id: XM_040278118   ⟹   XP_040134052
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344104,233,562 - 104,241,590 (-)NCBI
RefSeq Acc Id: XM_040278119   ⟹   XP_040134053
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344104,233,562 - 104,241,590 (-)NCBI
RefSeq Acc Id: XM_040278120   ⟹   XP_040134054
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344104,233,562 - 104,241,590 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_040134052   ⟸   XM_040278118
- Peptide Label: isoform X3
- UniProtKB: A0A287D5K7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040134054   ⟸   XM_040278120
- Peptide Label: isoform X5
- UniProtKB: A0A287D5K7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040134053   ⟸   XM_040278119
- Peptide Label: isoform X4
- UniProtKB: A0A287D5K7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040134051   ⟸   XM_040278117
- Peptide Label: isoform X2
- UniProtKB: A0A287D5K7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040134050   ⟸   XM_040278116
- Peptide Label: isoform X1
- UniProtKB: A0A287D5K7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000028871   ⟸   ENSSTOT00000032427
RefSeq Acc Id: ENSSTOP00000003176   ⟸   ENSSTOT00000003546


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003540 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003546.3 UniProtKB/TrEMBL
  ENSSTOT00000032427.1 UniProtKB/TrEMBL
InterPro CCDC154 UniProtKB/TrEMBL
NCBI Gene Ccdc154 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 154 UniProtKB/TrEMBL
  PTHR35153 UniProtKB/TrEMBL
Pfam CCDC154 UniProtKB/TrEMBL
UniProt A0A287D5K7 ENTREZGENE, UniProtKB/TrEMBL
  I3M2H2_ICTTR UniProtKB/TrEMBL