Hao1 (hydroxyacid oxidase 1) - Rat Genome Database

Name: Hao1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Hao1 (hydroxyacid oxidase 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Hao1

Name:

hydroxyacid oxidase 1

RGD ID:

12569873

Description:

ENCODES a protein that exhibits (S)-2-hydroxy-acid oxidase activity (inferred); FMN binding (inferred); glyoxylate oxidase activity (inferred); INVOLVED IN response to oxidative stress (ortholog); ASSOCIATED WITH Alagille syndrome (ortholog); calcium oxalate nephrolithiasis (ortholog); congenital myasthenic syndrome 18 (ortholog); FOUND IN intracellular membrane-bounded organelle (inferred); peroxisomal matrix (inferred); peroxisome (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Bonobo

Dog

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HAO1 (hydroxyacid oxidase 1)	NCBI	Ortholog
Mus musculus (house mouse):	Hao1 (hydroxyacid oxidase 1, liver)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Hao1 (hydroxyacid oxidase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Hao1 (hydroxyacid oxidase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	HAO1 (hydroxyacid oxidase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	HAO1 (hydroxyacid oxidase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	HAO1 (hydroxyacid oxidase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	HAO1 (hydroxyacid oxidase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Hao1 (hydroxyacid oxidase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	163,001,985 - 163,055,075 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936485	11,435,151 - 11,486,042 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936485	11,435,151 - 11,486,042 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alagille syndrome (ISO)

calcium oxalate nephrolithiasis (ISO)

congenital myasthenic syndrome 18 (ISO)

developmental and epileptic encephalopathy 12 (ISO)

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

nephrolithiasis (ISO)

Prostatic Neoplasms (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

fatty acid alpha-oxidation (IEA)

glycolate catabolic process (IEA)

response to oxidative stress (ISO)

Cellular Component

intracellular membrane-bounded organelle (IEA)

peroxisomal matrix (IEA)

peroxisome (IEA)

Molecular Function

(S)-2-hydroxy-acid oxidase activity (IEA)

FMN binding (IEA)

glyoxylate oxidase activity (IEA)

oxidoreductase activity (IEA)

References

Genomics

Comparative Map Data

Hao1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	163,001,985 - 163,055,075 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936485	11,435,151 - 11,486,042 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936485	11,435,151 - 11,486,042 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HAO1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	7,882,985 - 7,940,458 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	20	7,882,985 - 7,940,458 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	7,863,632 - 7,921,105 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	7,811,631 - 7,869,093 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	7,811,630 - 7,869,093	NCBI
Celera	20	7,933,209 - 7,990,669 (-)	NCBI		Celera
Cytogenetic Map	20	p12.3	NCBI
HuRef	20	7,814,621 - 7,872,059 (-)	NCBI		HuRef
CHM1_1	20	7,864,109 - 7,921,570 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	7,924,797 - 7,982,271 (-)	NCBI		T2T-CHM13v2.0

Hao1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	134,339,281 - 134,396,272 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	134,339,281 - 134,396,288 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	134,497,361 - 134,554,352 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	134,497,361 - 134,554,368 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	134,323,097 - 134,380,088 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	134,188,802 - 134,245,793 (-)	NCBI		MGSCv36	mm8
Celera	2	135,711,108 - 135,768,145 (-)	NCBI		Celera
Cytogenetic Map	2	F2	NCBI
cM Map	2	65.65	NCBI

Hao1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	121,757,400 - 121,828,721 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	121,771,836 - 121,828,721 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	125,674,380 - 125,731,284 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	134,287,471 - 134,345,573 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	131,930,568 - 131,987,464 (-)	NCBI	Rnor_WKY
Rnor_6.0	3	127,444,900 - 127,500,709 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	127,444,902 - 127,500,709 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	133,932,667 - 133,988,954 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	122,506,916 - 122,564,012 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	120,530,658 - 120,586,825 (-)	NCBI		Celera
Cytogenetic Map	3	q36	NCBI

Hao1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	17,981,791 - 18,035,224 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	17,981,791 - 18,035,151 (-)	NCBI	ChiLan1.0	ChiLan1.0

HAO1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	20	7,637,582 - 7,695,120 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	7,633,861 - 7,695,120 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	20	7,856,967 - 7,914,818 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

HAO1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	14,204,543 - 14,252,873 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	14,204,617 - 14,252,191 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	14,026,777 - 14,075,130 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	14,605,063 - 14,653,411 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	14,605,124 - 14,653,421 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	14,214,061 - 14,262,313 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	14,324,157 - 14,372,478 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	14,653,607 - 14,701,967 (+)	NCBI		UU_Cfam_GSD_1.0

HAO1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	16,744,442 - 16,802,442 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	16,746,153 - 16,802,460 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	18,814,432 - 18,870,834 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HAO1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	30,183,031 - 30,238,663 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	30,183,705 - 30,240,231 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666071	14,314,987 - 14,370,752 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hao1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	8,763,496 - 8,824,468 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	8,762,556 - 8,824,517 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005320488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010003700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSSTOT00000003917 ⟹ ENSSTOP00000003511

RefSeq Status:

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936485	11,435,151 - 11,486,042 (+)	Ensembl

RefSeq Acc Id:

XM_005320488 ⟹ XP_005320545

RefSeq Status:

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	163,001,985 - 163,055,075 (+)	NCBI
SpeTri2.0	NW_004936485	11,435,151 - 11,486,042 (+)	NCBI

Sequence:

show sequence

TGTAGAAGGCAATACTCAAAAAATAAACAACAAAAAGCCAGTAACAGCCGAGGTCGCAATAAGC
TAGGAAAATGTTCTCCCGGCTGGTTTGTATCGATGACTATGAACAACATGCTAAATCAGTGCTT
CAAAAGTCTATATATGACTATTATAGATCTGGGGCAAATGATCAGGAGACCTTGGCTGATAATA
TTACAGCATTCTCCAGATGGAAGCTATATCCAAGGATGCTCCAGAATGTTGCTGAAATCGATTT
GTCAACTTCTGTTTTAGGACAGTGGGTCAGCATGCCAATATGTGCTGGGGCTACTGCCATGCAG
TGCATGGCTCATGTGGATGGGGAACTTGCAACTGTGAGAGCCTGTCAGACCCTGGGAACTGGCA
TGATGCTGAGTTCCTGGGCTACCTCCTCAATTGAAGAAGTGGCCAAGGCTGGTCCTGAGGCCCT
TCGCTGGCTGCAGCTGTACATCTACAAGGACCGTGAGGTCACCAGGCAGCTGGTGAAGCGAGCA
GAGCAGATGGGCTACAAGGCCATATTCGTGACCGTGGACACCCCTTACCTGGGAAACCGCTTTG
ATGATGTGAGGAACAGGTTCAAGCTGCCTCCTCAACTCAGGATGAAGAATTTTGAAACCAATGA
TTTAGCATTTTCTCCTACGGAAAATTTTGGAGATGACAGTGGACTTGCTGCATACGTGGCGAAA
GCTATAGACCCATCCATCAGTTGGAAAGATATTGAGTGGCTGAGGGGACTGACGTCACTGCCTA
TTGTTGCAAAGGGCATCTTAAGAGGCGATGATGCCAGGAAGGCAGTTAAGCATGGTCTGGATGG
GATCTTGGTGTCCAATCATGGCGCTCGACAACTTGATGGAGTGCCAGCCACCATTGACGTTCTG
CCAGAAATTGTGGAGGCCGTGGAGGGAAAGGTGGAAGTCTTCCTGGATGGGGGTGTAAGGAAAG
GCACTGATGTTCTGAAAGCTCTAGCCCTGGGTGCCAAGGCTGTGTTTGTGGGGAGACCCATCAT
ATGGGGCTTAGCCCTCCAGGGGGAGAAAGGTGTCCAAGATGTCCTTGAGATACTCAAGGAAGAA
TTTCGGTTGGCCATGGCTCTGAGTGGGTGCCAGAATGTGAAAGTCATTGACAAGACATTGGTGA
GGAAAAATCCTTTGGCTGTTTCCAAGATCTGACAGTGCACAATATTTTCCCATCTGTATTATTT
TTTTTCAGCATGTATTACTTGACAAAGAGACACTGTGCAGAGGGTGACCACAGTCTGTAATTCC
CTACTTCAATACAAAGGGTGTCGTTCTTCTCTAACAAAATAGCAATCCCTTTTAGTTCATTGCT
TTTGACTTTTCAATGGGTGTCATAGGAACTTTTTAGAAGAAATGGACTTGCATCCTGGAAATAT
ATTAACTGTTAAAAAGAAAACATTGAAAATGTGTTTAGACAACGTCATCCTCTGGCAGGTAAAA
GTGCTGGAAAACAAAAGATATCCTTTGGTAAAACTGGAGGTAGCTAACTCAGAGGTAAAAAGAT
AATGTTCTCACTCTTTATTAACCTGCATTGTGTTTGGAAATTCTAGTGCTCAGGTTTGACATAC
TGGAGATGTTTGGAGAAACATGAGATTTGGAATCACAACGCAAACTAAATAGTACTGGGAATTG
GAATGGATGGTGGTAATTTGTGATTTTT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005320545	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	KAG3262859	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_005320545 ⟸ XM_005320488

- UniProtKB:

I3M394 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MFSRLVCIDDYEQHAKSVLQKSIYDYYRSGANDQETLADNITAFSRWKLYPRMLQNVAEIDLST
SVLGQWVSMPICAGATAMQCMAHVDGELATVRACQTLGTGMMLSSWATSSIEEVAKAGPEALRW
LQLYIYKDREVTRQLVKRAEQMGYKAIFVTVDTPYLGNRFDDVRNRFKLPPQLRMKNFETNDLA
FSPTENFGDDSGLAAYVAKAIDPSISWKDIEWLRGLTSLPIVAKGILRGDDARKAVKHGLDGIL
VSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIIWG
LALQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVRKNPLAVSKI

hide sequence

RefSeq Acc Id:

ENSSTOP00000003511 ⟸ ENSSTOT00000003917

Protein Domains

FMN hydroxy acid dehydrogenase

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000003924	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSSTOP00000003511	ENTREZGENE
	ENSSTOP00000003511.3	UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000003917.3	UniProtKB/TrEMBL
Gene3D-CATH	3.20.20.70	UniProtKB/TrEMBL
InterPro	Aldolase_TIM	UniProtKB/TrEMBL
	Alpha-hydoxy_acid_DH_FMN	UniProtKB/TrEMBL
	FMN-dep_DH	UniProtKB/TrEMBL
	FMN_HAD	UniProtKB/TrEMBL
	FMN_hydac_DH_AS	UniProtKB/TrEMBL
NCBI Gene	Hao1	ENTREZGENE
PANTHER	HYDROXYACID OXIDASE 1	UniProtKB/TrEMBL
	S -2-HYDROXY-ACID OXIDASE-RELATED	UniProtKB/TrEMBL
Pfam	FMN_dh	UniProtKB/TrEMBL
PIRSF	Al-hdrx_acd_dh	UniProtKB/TrEMBL
PROSITE	FMN_HYDROXY_ACID_DH_1	UniProtKB/TrEMBL
	FMN_HYDROXY_ACID_DH_2	UniProtKB/TrEMBL
Superfamily-SCOP	FMN-linked oxidoreductases	UniProtKB/TrEMBL
UniProt	I3M394	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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