Adat1 (adenosine deaminase tRNA specific 1)

Gene: Adat1 (adenosine deaminase tRNA specific 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Adat1

Name:

adenosine deaminase tRNA specific 1

RGD ID:

12569782

Description:

ENCODES a protein that exhibits adenosine deaminase activity (inferred); hydrolase activity (inferred); metal ion binding (inferred); INVOLVED IN RNA processing (inferred); tRNA processing (inferred); ASSOCIATED WITH genetic disease (ortholog); Joubert syndrome 20 (ortholog); prostate cancer (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

adenosine deaminase, tRNA specific 1; adenosine deaminase, tRNA specific 1, transcript variant X1; adenosine deaminase, tRNA specific 1, transcript variant X2; adenosine deaminase, tRNA specific 1, transcript variant X3; adenosine deaminase, tRNA specific 1, transcript variant X5; tRNA-specific adenosine deaminase 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	35,297,970 - 35,334,802 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	24,266,285 - 24,289,841 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	24,244,412 - 24,291,111 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Joubert syndrome 20 (ISO)

prostate cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

RNA processing (IEA)

tRNA processing (IEA)

Molecular Function

adenosine deaminase activity (IEA)

hydrolase activity (IEA)

metal ion binding (IEA)

RNA binding (IEA)

tRNA-specific adenosine deaminase activity (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Adat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	35,297,970 - 35,334,802 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	24,266,285 - 24,289,841 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	24,244,412 - 24,291,111 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ADAT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	75,596,868 - 75,623,281 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	75,596,868 - 75,623,300 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	75,630,766 - 75,657,179 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	74,190,499 - 74,214,655 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	74,190,498 - 74,214,655	NCBI
Celera	16	59,926,593 - 59,951,568 (-)	NCBI		Celera
Cytogenetic Map	16	q23.1	NCBI
HuRef	16	61,385,921 - 61,410,898 (-)	NCBI		HuRef
CHM1_1	16	77,044,616 - 77,069,607 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	81,645,156 - 81,671,584 (-)	NCBI		T2T-CHM13v2.0

Adat1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	112,685,552 - 112,718,938 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	112,693,540 - 112,718,934 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	111,958,920 - 111,992,307 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	111,966,908 - 111,992,302 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	114,490,808 - 114,516,202 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	114,853,581 - 114,878,975 (-)	NCBI		MGSCv36	mm8
Celera	8	116,196,099 - 116,221,633 (-)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	58.23	NCBI

Adat1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	56,825,153 - 56,866,136 (-)	NCBI		GRCr8
mRatBN7.2	19	39,918,083 - 39,956,886 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	39,918,227 - 39,956,883 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	46,796,585 - 46,820,429 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	47,449,915 - 47,473,761 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	49,695,556 - 49,719,341 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	44,172,496 - 44,212,147 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	44,187,331 - 44,211,208 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	54,979,589 - 55,017,852 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	41,902,820 - 41,926,545 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	19	39,293,603 - 39,317,329 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

Adat1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955484	1,942,529 - 1,967,830 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955484	1,942,868 - 1,964,901 (+)	NCBI	ChiLan1.0	ChiLan1.0

ADAT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	85,295,391 - 85,345,361 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	91,218,164 - 91,264,114 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	56,162,278 - 56,192,856 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	75,510,780 - 75,540,312 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	75,516,899 - 75,540,312 (-)	Ensembl	panpan1.1		panPan2

ADAT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	75,191,114 - 75,235,735 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	75,190,772 - 75,234,480 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	75,168,475 - 75,213,089 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	75,505,202 - 75,549,843 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	75,505,232 - 75,548,588 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	75,441,201 - 75,485,808 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	75,276,415 - 75,321,053 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	75,767,366 - 75,812,376 (+)	NCBI		UU_Cfam_GSD_1.0

ADAT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	12,076,356 - 12,108,088 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	12,076,319 - 12,107,937 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	11,917,240 - 11,948,862 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ADAT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	61,083,029 - 61,108,751 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	61,082,819 - 61,108,330 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	14,951,289 - 14,976,352 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Adat1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624746	11,356,599 - 11,378,183 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013365634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021721744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021721745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021721746	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002483233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000025406 ⟹ ENSSTOP00000016380

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936475	24,266,285 - 24,289,841 (-)	Ensembl

RefSeq Acc Id:

XM_013365634 ⟹ XP_013221088

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	35,297,970 - 35,322,787 (+)	NCBI
SpeTri2.0	NW_004936475	24,266,333 - 24,291,100 (-)	NCBI

Sequence:

show sequence

CTGGGCTTCTGTGCTGAAGCTCTTTCCCTCCGGGGCTGTCCGTCGGGGAGGTGGAAGGGGTGGA
TGGCAGGATATCTGCCTTCATAAAATATATTGCTTGTGATGCCTCCCTGGAAATGACAGGGGGA
GTCCCTTCCAAATGAAGGATTTAGGATCTTCCATACTTCTCTTTGCTTCTAAAGATTCAAGACT
TCCCGCCCAGCGTGGTGGTGCAGGCCTGTAATCCCAGCTGCTGGGGAGGCTGAGGCAGGAGGAT
GTGCTTGCAGTATGATCACATCTTCTACTAAGAAGCTTTCATATAATTGAGTCCAAGTGAGGTC
AGGATGTATCTAGTGAGCACTGATACAACCAAGAGTAGAAGACTTTCCTACAAAATATCCCAGG
CCTTTTTCAGGAGTGATCTTTTTTTTTTTTTAAATTCATGACTTTACGTGCCCATTACAGTCTA
CTTACCCACCACCAAGTAGATCAAGGGCCTCAGCACCAGCTCCAACCATGTGGACCCCAGATGA
GATCGCTCAACTGTGCTATAAGCACTATGAGATCAGGCTGCCCAAGCAAGGGAAGCCGGAGCCA
AACCGTGAATGGACGTTGTTGGCAGCTGTAGTGAAGATACAGTTTCCAATTTATGAGGCCAGTG
ACACTCCTGATAAGCCAGTACAAGTGACAAAAGAAGTTGTCTCAATGGGAACAGGAACGAAATG
CATAGGCCAATCCAAAATGAGGAAGAGTGGAGATATTCTCAACGATAGCCATGCTGAGGTTATA
GCCAGAAGGAGTTTCCAAAGGTACCTTCTCTATCAGCTGCAGTTGGCAGCTACCCTAAACAAGG
AGAGTATCTTTGTCCCAGGAACTCAAAGAGGACTGTGGAAACTCAGACCCAACCTCTTGTTTGT
GTTTTTCTCCAGCCATACGCCCTGTGGCGATGCCTCCATCATTCCAATGCTTGAGTTTGAAGAA
CAGCCTTGCTGTCCTGTCATCAGAGATCAGGATAGCAGTTTATCATTAGAAGACAGTGGTAATG
TGAAGACTCCTGAAAATGAAAGGAAATACAAAGACCCTGACGGTCCTGTAACCAAAAAGATGAG
GTTTGAGCCTGGAACTCCTGCCAGGTTCTTCACCAATGGCACAGCTCAGCATGGCAAGCAAGAC
AGTGGCCCGTTTGCATCAGGTGTCAGAAGCTCTAACCTCACTGTAGAAAGATTGGCCACTGTCG
CCTGTGGCGCTCCCAGGAGTGCCACAGTGGTGGACATTTATAGAACTGGAGCCAAGTGTGTGCC
TGGAGAAGCTGAAGACTTGAGGAAGCCAGGTGCTGCATACCACCAGGTGGGGTTGCTCCGAGTG
AAGCCAGGCCGGGGAGACAGGACCTGCTCCATGTCATGCAGTGACAAGATGGCCCGATGGAATG
TCCTTGGCTGCCAGGGTGCACTTTTGATGCATTTCTTAGAAGAGCCCATCTACCTGTCAGCTGT
GGTCATTGGGAAGTGCCCATACAGCCAGGAAGTCATGCAGAGAGCACTGATTGGAAGGTGTCAA
AATGTCTTGGCTTTACCCAAAGGTTATGGAGTTCAAGGACTGAAAATACAGCAGTCAGATTTAC
TGTTTGAACAGAGTCGCTGTGCAGTGCAGACAAAAAGGGCTGACAGTCCCGGCCGACTTGTTCC
ATGTGGGTCAGCTATCAGCTGGGCTGCAGTTCCTGAGCAGCCATTGGATGTTACTGCCAATGGC
TTTCCACAGGGAACAACAAAGAAAGGAATTGGAAGTCTTCAGGCCAGATCCCGAATCAGCAAAG
TGGAACTCTTCAGATCATTCCAGAAGCTGCTGAGCAGCATTTCAGAAGACAAGTGGCCAGACTC
CCTCAGGTTGCAGAAGTTGGACACCTACCAGGAGCATAAGGAGGCTGCATCTGCTTACCAGGAA
GCCTGGAGCGCACTTCGGAAGCAAGCCTTTGCATCCTGGATCAGAAACCCACCAGACTATCACC
AGTTTAAATGAGAAAGAGAAGTTTTTAGAAGATCTGCTGGTAGCAGGACTCTTCATGTTGACTG
CCTCTTCCTTCATGCAGGATAATCCTTAAGCTTTTCTAATGGCTAAATTAAAAAAAAAAAAAAA
A

hide sequence

RefSeq Acc Id:

XM_021721744 ⟹ XP_021577419

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	35,297,995 - 35,322,787 (+)	NCBI
SpeTri2.0	NW_004936475	24,266,333 - 24,291,111 (-)	NCBI

Sequence:

show sequence

CCGCGGCGGCCCTGGGCTTCTGTGCTGAAGCTCTTTCCCTCCGGGGCTGTCCGTCGGGGAGGTG
GAAGGGATTCAAGACTTCCCGCCCAGCGTGGTGGTGCAGGCCTGTAATCCCAGCTGCTGGGGAG
GCTGAGGCAGGAGGATGTGCTTGCAGTATGATCACATCTTCTACTAAGAAGCTTTCATATAATT
GAGTCCAAGTGAGGTCAGGATGTATCTAGTGAGCACTGATACAACCAAGAGTAGAAGACTTTCC
TACAAAATATCCCAGGCCTTTTTCAGGAGTGATCTTTTTTTTTTTTTAAATTCATGACTTTACG
TGCCCATTACAGTCTACTTACCCACCACCAAGTAGATCAAGGGCCTCAGCACCAGCTCCAACCA
TGTGGACCCCAGATGAGATCGCTCAACTGTGCTATAAGCACTATGAGATCAGGCTGCCCAAGCA
AGGGAAGCCGGAGCCAAACCGTGAATGGACGTTGTTGGCAGCTGTAGTGAAGATACAGTTTCCA
ATTTATGAGGCCAGTGACACTCCTGATAAGCCAGTACAAGTGACAAAAGAAGTTGTCTCAATGG
GAACAGGAACGAAATGCATAGGCCAATCCAAAATGAGGAAGAGTGGAGATATTCTCAACGATAG
CCATGCTGAGGTTATAGCCAGAAGGAGTTTCCAAAGGTACCTTCTCTATCAGCTGCAGTTGGCA
GCTACCCTAAACAAGGAGAGTATCTTTGTCCCAGGAACTCAAAGAGGACTGTGGAAACTCAGAC
CCAACCTCTTGTTTGTGTTTTTCTCCAGCCATACGCCCTGTGGCGATGCCTCCATCATTCCAAT
GCTTGAGTTTGAAGAACAGCCTTGCTGTCCTGTCATCAGAGATCAGGATAGCAGTTTATCATTA
GAAGACAGTGGTAATGTGAAGACTCCTGAAAATGAAAGGAAATACAAAGACCCTGACGGTCCTG
TAACCAAAAAGATGAGGTTTGAGCCTGGAACTCCTGCCAGGTTCTTCACCAATGGCACAGCTCA
GCATGGCAAGCAAGACAGTGGCCCGTTTGCATCAGGTGTCAGAAGCTCTAACCTCACTGTAGAA
AGATTGGCCACTGTCGCCTGTGGCGCTCCCAGGAGTGCCACAGTGGTGGACATTTATAGAACTG
GAGCCAAGTGTGTGCCTGGAGAAGCTGAAGACTTGAGGAAGCCAGGTGCTGCATACCACCAGGT
GGGGTTGCTCCGAGTGAAGCCAGGCCGGGGAGACAGGACCTGCTCCATGTCATGCAGTGACAAG
ATGGCCCGATGGAATGTCCTTGGCTGCCAGGGTGCACTTTTGATGCATTTCTTAGAAGAGCCCA
TCTACCTGTCAGCTGTGGTCATTGGGAAGTGCCCATACAGCCAGGAAGTCATGCAGAGAGCACT
GATTGGAAGGTGTCAAAATGTCTTGGCTTTACCCAAAGGTTATGGAGTTCAAGGACTGAAAATA
CAGCAGTCAGATTTACTGTTTGAACAGAGTCGCTGTGCAGTGCAGACAAAAAGGGCTGACAGTC
CCGGCCGACTTGTTCCATGTGGGTCAGCTATCAGCTGGGCTGCAGTTCCTGAGCAGCCATTGGA
TGTTACTGCCAATGGCTTTCCACAGGGAACAACAAAGAAAGGAATTGGAAGTCTTCAGGCCAGA
TCCCGAATCAGCAAAGTGGAACTCTTCAGATCATTCCAGAAGCTGCTGAGCAGCATTTCAGAAG
ACAAGTGGCCAGACTCCCTCAGGTTGCAGAAGTTGGACACCTACCAGGAGCATAAGGAGGCTGC
ATCTGCTTACCAGGAAGCCTGGAGCGCACTTCGGAAGCAAGCCTTTGCATCCTGGATCAGAAAC
CCACCAGACTATCACCAGTTTAAATGAGAAAGAGAAGTTTTTAGAAGATCTGCTGGTAGCAGGA
CTCTTCATGTTGACTGCCTCTTCCTTCATGCAGGATAATCCTTAAGCTTTTCTAATGGCTAAAT
TAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_021721745 ⟹ XP_021577420

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	35,298,275 - 35,334,802 (+)	NCBI
SpeTri2.0	NW_004936475	24,254,386 - 24,291,031 (-)	NCBI

Sequence:

show sequence

GAGGGGTGGGAGTCCCCGGGTCAGGGGCGCGCAGTTGAGGGGTTTCTGGGTCGCTGGGTCAGGT
GCTTCGGGACTGGCGTGGCCAGTTCGGTTTTATATGGGAAGAAGGGTCACACGTCACGTGGGAA
CGGTCGGGTCCACGCCCGGAGTTGTCAACACGCGCCGCGTGGAGCGCTCTCGTGGCGGGGGCGC
GGCGTGCAGCCTCGAGCCGCTGCCTCGTGACCCGCGAGTCGGCGCTCGCCTGGTTCCCCCGTGA
CGGCGCCGGAGCCTCGCGGTCTTCCTTGGCCGCGGATTTAGCAAGGGGTTAGCGAATAGTAGCC
TCCCGCTCCACCAAATCCCGGAAAAGCTCCTCTGTAGCTGACTTGACTTTTCTTTGAAAAGGAA
GAACGTTCTTCAGCTTGCTGCAGCTGTTACAAAATGCGGCCTTGTGGGCAAAGGAACGCCTGTT
TAACTGAGCTGTTTTATATGAAGGTGTTTTTCAAGCTCTGGAAGGGGTGCAGGCTTGAATTATA
ATGGACCCATTAAAACTTTCATGCATTTCAGCAGCTGCGTGTGTTCGTTAGCATCAGCTAGCTG
AATGAGATGATTAGCTTGGATTGCTTTCTTGGGAGACACTGTTTCTTCTGGCAAATTCCCCCTT
CCCTGACTGGCTTAGTTTGTTATGTGCATCTTTGCATTATTTTCAGGTGGATGGCAGGATATCT
GCCTTCATAAAATATATTGCTTGTGATGCCTCCCTGGAAATGACAGGGGGAGTCCCTTCCAAAT
GAAGGATTTAGGATCTTCCATACTTCTCTTTGCTTCTAAAGATTCAAGACTTCCCGCCCAGCGT
GGTGGTGCAGGCCTGTAATCCCAGCTGCTGGGGAGGCTGAGGCAGGAGGATGTGCTTGCAGTAT
GATCACATCTTCTACTAAGAAGCTTTCATATAATTGAGTCCAAGTGAGGTCAGGATGTATCTAG
TGAGCACTGATACAACCAAGAGTAGAAGACTTTCCTACAAAATATCCCAGGCCTTTTTCAGGAG
TGATCTTTTTTTTTTTTTAAATTCATGACTTTACGTGCCCATTACAGTCTACTTACCCACCACC
AAGTAGATCAAGGGCCTCAGCACCAGCTCCAACCATGTGGACCCCAGATGAGATCGCTCAACTG
TGCTATAAGCACTATGAGATCAGGCTGCCCAAGCAAGGGAAGCCGGAGCCAAACCGTGAATGGA
CGTTGTTGGCAGCTGTAGTGAAGATACAGTTTCCAATTTATGAGGCCAGTGACACTCCTGATAA
GCCAGTACAAGTGACAAAAGAAGTTGTCTCAATGGGAACAGGAACGAAATGCATAGGCCAATCC
AAAATGAGGAAGAGTGGAGATATTCTCAACGATAGCCATGCTGAGGTTATAGCCAGAAGGAGTT
TCCAAAGGTACCTTCTCTATCAGCTGCAGTTGGCAGCTACCCTAAACAAGGAGAGTATCTTTGT
CCCAGGAACTCAAAGAGGACTGTGGAAACTCAGACCCAACCTCTTGTTTGTGTTTTTCTCCAGC
CATACGCCCTGTGGCGATGCCTCCATCATTCCAATGCTTGAGTTTGAAGAACAGCCTTGCTGTC
CTGTCATCAGAGATCAGGATAGCAGTTTATCATTAGAAGACAGTGGTAATGTGAAGACTCCTGA
AAATGAAAGGAAATACAAAGACCCTGACGGTCCTGTAACCAAAAAGATGAGGTTTGAGCCTGGA
ACTCCTGCCAGGTTCTTCACCAATGGCACAGCTCAGCATGGCAAGCAAGACAGTGGCCCGTTTG
CATCAGGTGTCAGAAGCTCTAACCTCACTGTAGAAAGATTGGCCACTGTCGCCTGTGGCGCTCC
CAGGAGTGCCACAGTGGTGGACATTTATAGAACTGGAGCCAAGTGTGTGCCTGGAGAAGCTGAA
GACTTGAGGAAGCCAGGTGCTGCATACCACCAGGTGGGGTTGCTCCGAGTGAAGCCAGGCCGGG
GAGACAGGACCTGCTCCATGTCATGCAGTGACAAGATGGCCCGATGGAATGTCCTTGGCTGCCA
GGGTGCACTTTTGATGCATTTCTTAGAAGAGCCCATCTACCTGTCAGCTGTGGTCATTGGGAAG
TGCCCATACAGCCAGGAAGTCATGCAGAGAGCACTGATTGGAAGGTGTCAAAATGTCTTGGCTT
TACCCAAAGGTTATGGAGTTCAAGGACTGAAAATACAGCAGTCAGATTTACTGTTTGAACAGAG
TCGCTGTGCAGTGCAGACAAAAAGGGCTGACAGTCCCGGCCGACTTGTTCCATGTGGGTCAGCT
ATCAGCTGGGCTGCAGTTCCTGAGCAGCCATTGGATGTTACTGCCAATGGCTTTCCACAGGGAA
CAACAAAGAAAGGAATTGGAAGTCTTCAGGCCAGATCCCGAATCAGCAAAGTGGAACTCTTCAG
ATCATTCCAGAAGCTGCTGAGCAGCATTTCAGAAGACAAGTGGCCAGACTCCCTCAGATATTCA
TAAAGAAAATTTAATTGGATATATAACGCAATGAGAAACTTTCAAGAACTCTACCTATTTATGC
TGTGACATACAGATGGCCGCAGTAGTCATATTGGTGATATGGATATGGGAGAAATGGAAAAAAC
TTTTGTCTTAATCTGGTAACCCAGGCTCTGGATTCAGATATGGACATTTTGCCACTTGTCCAGA
TGGGCCAGCAGAGATAGGAGTCATCTTCTAGAACTAAGCCTGTTCACTGCTTTTCAAAGCCCAA
GTGTAGCAGAGTGTCTCTGTGGGAAACAAGGCAGAAGCAGAAAATCACTCCAAGAGGGAACTCA
GACTGCCAAATAATTGGTCTCAAGCACGAGTTCACTGGACTTTGGCTCATTCCCCAAGGGGAAG
AGCTCACAATGGAAACAGTGATGGTCACTTACTCAGGCAGCCAAGAGAATGAAAAGCACATTGA
AACCCAGCAGTGTCCCTGCGGGAGAGGTACAGTGGGCCCCTTGGTGGTGAAACCGACCTGACAA
CGCAGTGGATCACTGAGCCCATTCCCGGCGTCTGTCTTCAGTTCCACAACAGACCTTTATGTGC
ACCCTCTCAGGAGATCTCTGAGAAGTGATACGGCCAGCAGCCTAAGCTTCACCCCACAGCAGAT
TCGGGCTCAATCTAGTTTGCCCCTTTGCTTTGAATTCCATTTTGTTGATTAAGAAGAGCCCGCT
TAGATGTAAAGTCCCTGCCAAAATACAAAAGTCCCTCCCACGCAGGCTTCCTCATCTTCCCTTT
CTTATTTTCGCCTCTTGTGGACTGTTTCCACCTCCAGTCGCTCTTTTCATGCTGTATTTGTTCC
TCAGCTTATCCAGTGCCACTGTGAATGTCCTTCTGTCCTAGCATGTCATTAACTGTTGGGCCGA
GAGACCAGCTGGACGGGGGTGAAGGAATGGCAGCAGCACAATCTAAACCGCCCTGACCGTGCTC
GCCCACCTGTGCCAAGCAGGCAGATGGCGCAGCCGAGCTCTGCGCCTTATGTGAGTTGCTAAGG
TGTGAGTGCTTGTGTGCCCGCTAACTGTATGTGCTGAAATCCTAACTCCCCATGTGGTGGTATT
AGGAGGTGGTTAGGTCTTAAGGGAAGAGCCCTCATGAATGGGATTAGCTCCTTTACAAGAGACC
CCAGGGTAATTCCCTGTCTCTTCTGCCTTGTGAGGATATAATAAGATGGCCATCTAAGAATCAG
GGAAATCTGCTACCTTAATCTTAGACCTCCCAGCCTTCAGCACTGAGAAGTGAATCTAGTTTAT
GATGTTTTGTTGGAGTAGCCCAGACATGGGTTAGTATTTTGTTGGCATATACTTTGGCAGAATT
CTGTCCTAAAATAATACTGTGGTAAAGGGCCATAAACCCAGATATCTTTAGGAGTAGGAAATAA
AGAAAGCAAGTGGAGCCAGGCGTGGTGGCT

hide sequence

RefSeq Acc Id:

XM_021721746 ⟹ XP_021577421

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	35,300,446 - 35,322,787 (+)	NCBI
SpeTri2.0	NW_004936475	24,266,333 - 24,288,802 (-)	NCBI

Sequence:

show sequence

GGCCTCAGCACCAGCTCCAACCATGTGGACCCCAGATGAGATCGCTCAACTGTGCTATAAGCAC
TATGAGATCAGGCTGCCCAAGCAAGGGAAGCCGGAGCCAAACCGTGAATGGACGTTGTTGGCAG
CTGTAGTGAAGATACAGTTTCCAATTTATGAGGCCAGTGACACTCCTGATAAGCCAGTACAAGT
GACAAAAGAAGTTGTCTCAATGGGAACAGGAACGAAATGCATAGGCCAATCCAAAATGAGGAAG
AGTGGAACTAGGCCCTCTCCAGTATGTCTTCCATATGTCTTCACCTACTCCTGTCTTTGCCGTA
GGAGATATTCTCAACGATAGCCATGCTGAGGTTATAGCCAGAAGGAGTTTCCAAAGGTACCTTC
TCTATCAGCTGCAGTTGGCAGCTACCCTAAACAAGGAGAGTATCTTTGTCCCAGGAACTCAAAG
AGGACTGTGGAAACTCAGACCCAACCTCTTGTTTGTGTTTTTCTCCAGCCATACGCCCTGTGGC
GATGCCTCCATCATTCCAATGCTTGAGTTTGAAGAACAGCCTTGCTGTCCTGTCATCAGAGATC
AGGATAGCAGTTTATCATTAGAAGACAGTGGTAATGTGAAGACTCCTGAAAATGAAAGGAAATA
CAAAGACCCTGACGGTCCTGTAACCAAAAAGATGAGGTTTGAGCCTGGAACTCCTGCCAGGTTC
TTCACCAATGGCACAGCTCAGCATGGCAAGCAAGACAGTGGCCCGTTTGCATCAGGTGTCAGAA
GCTCTAACCTCACTGTAGAAAGATTGGCCACTGTCGCCTGTGGCGCTCCCAGGAGTGCCACAGT
GGTGGACATTTATAGAACTGGAGCCAAGTGTGTGCCTGGAGAAGCTGAAGACTTGAGGAAGCCA
GGTGCTGCATACCACCAGGTGGGGTTGCTCCGAGTGAAGCCAGGCCGGGGAGACAGGACCTGCT
CCATGTCATGCAGTGACAAGATGGCCCGATGGAATGTCCTTGGCTGCCAGGGTGCACTTTTGAT
GCATTTCTTAGAAGAGCCCATCTACCTGTCAGCTGTGGTCATTGGGAAGTGCCCATACAGCCAG
GAAGTCATGCAGAGAGCACTGATTGGAAGGTGTCAAAATGTCTTGGCTTTACCCAAAGGTTATG
GAGTTCAAGGACTGAAAATACAGCAGTCAGATTTACTGTTTGAACAGAGTCGCTGTGCAGTGCA
GACAAAAAGGGCTGACAGTCCCGGCCGACTTGTTCCATGTGGGTCAGCTATCAGCTGGGCTGCA
GTTCCTGAGCAGCCATTGGATGTTACTGCCAATGGCTTTCCACAGGGAACAACAAAGAAAGGAA
TTGGAAGTCTTCAGGCCAGATCCCGAATCAGCAAAGTGGAACTCTTCAGATCATTCCAGAAGCT
GCTGAGCAGCATTTCAGAAGACAAGTGGCCAGACTCCCTCAGGTTGCAGAAGTTGGACACCTAC
CAGGAGCATAAGGAGGCTGCATCTGCTTACCAGGAAGCCTGGAGCGCACTTCGGAAGCAAGCCT
TTGCATCCTGGATCAGAAACCCACCAGACTATCACCAGTTTAAATGAGAAAGAGAAGTTTTTAG
AAGATCTGCTGGTAGCAGGACTCTTCATGTTGACTGCCTCTTCCTTCATGCAGGATAATCCTTA
AGCTTTTCTAATGGCTAAATTAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_040279992 ⟹ XP_040135926

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	35,298,275 - 35,322,787 (+)	NCBI

RefSeq Acc Id:

XM_040279993 ⟹ XP_040135927

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	35,299,569 - 35,322,787 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_013221088	(Get FASTA)	NCBI Sequence Viewer
	XP_021577419	(Get FASTA)	NCBI Sequence Viewer
	XP_021577420	(Get FASTA)	NCBI Sequence Viewer
	XP_021577421	(Get FASTA)	NCBI Sequence Viewer
	XP_040135926	(Get FASTA)	NCBI Sequence Viewer
	XP_040135927	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000016380.1
GenBank Protein	KAG3256823	(Get FASTA)	NCBI Sequence Viewer
	KAG3256824	(Get FASTA)	NCBI Sequence Viewer
	KAG3256825	(Get FASTA)	NCBI Sequence Viewer
	KAG3256826	(Get FASTA)	NCBI Sequence Viewer
	KAG3256827	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_013221088 ⟸ XM_013365634
- Peptide Label:	isoform X1
- UniProtKB:	I3MW85 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWTPDEIAQLCYKHYEIRLPKQGKPEPNREWTLLAAVVKIQFPIYEASDTPDKPVQVTKEVVSM GTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLYQLQLAATLNKESIFVPGTQRGLWKLR PNLLFVFFSSHTPCGDASIIPMLEFEEQPCCPVIRDQDSSLSLEDSGNVKTPENERKYKDPDGP VTKKMRFEPGTPARFFTNGTAQHGKQDSGPFASGVRSSNLTVERLATVACGAPRSATVVDIYRT GAKCVPGEAEDLRKPGAAYHQVGLLRVKPGRGDRTCSMSCSDKMARWNVLGCQGALLMHFLEEP IYLSAVVIGKCPYSQEVMQRALIGRCQNVLALPKGYGVQGLKIQQSDLLFEQSRCAVQTKRADS PGRLVPCGSAISWAAVPEQPLDVTANGFPQGTTKKGIGSLQARSRISKVELFRSFQKLLSSISE DKWPDSLRLQKLDTYQEHKEAASAYQEAWSALRKQAFASWIRNPPDYHQFK hide sequence

RefSeq Acc Id:

XP_021577420 ⟸ XM_021721745

- Peptide Label:

isoform X2

- Sequence:

show sequence

MWTPDEIAQLCYKHYEIRLPKQGKPEPNREWTLLAAVVKIQFPIYEASDTPDKPVQVTKEVVSM
GTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLYQLQLAATLNKESIFVPGTQRGLWKLR
PNLLFVFFSSHTPCGDASIIPMLEFEEQPCCPVIRDQDSSLSLEDSGNVKTPENERKYKDPDGP
VTKKMRFEPGTPARFFTNGTAQHGKQDSGPFASGVRSSNLTVERLATVACGAPRSATVVDIYRT
GAKCVPGEAEDLRKPGAAYHQVGLLRVKPGRGDRTCSMSCSDKMARWNVLGCQGALLMHFLEEP
IYLSAVVIGKCPYSQEVMQRALIGRCQNVLALPKGYGVQGLKIQQSDLLFEQSRCAVQTKRADS
PGRLVPCGSAISWAAVPEQPLDVTANGFPQGTTKKGIGSLQARSRISKVELFRSFQKLLSSISE
DKWPDSLRYS

hide sequence

RefSeq Acc Id:	XP_021577419 ⟸ XM_021721744
- Peptide Label:	isoform X1
- UniProtKB:	I3MW85 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWTPDEIAQLCYKHYEIRLPKQGKPEPNREWTLLAAVVKIQFPIYEASDTPDKPVQVTKEVVSM GTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLYQLQLAATLNKESIFVPGTQRGLWKLR PNLLFVFFSSHTPCGDASIIPMLEFEEQPCCPVIRDQDSSLSLEDSGNVKTPENERKYKDPDGP VTKKMRFEPGTPARFFTNGTAQHGKQDSGPFASGVRSSNLTVERLATVACGAPRSATVVDIYRT GAKCVPGEAEDLRKPGAAYHQVGLLRVKPGRGDRTCSMSCSDKMARWNVLGCQGALLMHFLEEP IYLSAVVIGKCPYSQEVMQRALIGRCQNVLALPKGYGVQGLKIQQSDLLFEQSRCAVQTKRADS PGRLVPCGSAISWAAVPEQPLDVTANGFPQGTTKKGIGSLQARSRISKVELFRSFQKLLSSISE DKWPDSLRLQKLDTYQEHKEAASAYQEAWSALRKQAFASWIRNPPDYHQFK hide sequence

RefSeq Acc Id:

XP_021577421 ⟸ XM_021721746

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSSPTPVFAVGDILNDSHAEVIARRSFQRYLLYQLQLAATLNKESIFVPGTQRGLWKLRPNLLF
VFFSSHTPCGDASIIPMLEFEEQPCCPVIRDQDSSLSLEDSGNVKTPENERKYKDPDGPVTKKM
RFEPGTPARFFTNGTAQHGKQDSGPFASGVRSSNLTVERLATVACGAPRSATVVDIYRTGAKCV
PGEAEDLRKPGAAYHQVGLLRVKPGRGDRTCSMSCSDKMARWNVLGCQGALLMHFLEEPIYLSA
VVIGKCPYSQEVMQRALIGRCQNVLALPKGYGVQGLKIQQSDLLFEQSRCAVQTKRADSPGRLV
PCGSAISWAAVPEQPLDVTANGFPQGTTKKGIGSLQARSRISKVELFRSFQKLLSSISEDKWPD
SLRLQKLDTYQEHKEAASAYQEAWSALRKQAFASWIRNPPDYHQFK

hide sequence

RefSeq Acc Id:	XP_040135926 ⟸ XM_040279992
- Peptide Label:	isoform X1
- UniProtKB:	I3MW85 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040135927 ⟸ XM_040279993
- Peptide Label:	isoform X1
- UniProtKB:	I3MW85 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000016380 ⟸ ENSSTOT00000025406

Protein Domains

A to I editase

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000022627	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000025406.2	UniProtKB/TrEMBL
InterPro	A_deamin	UniProtKB/TrEMBL
NCBI Gene	Adat1	ENTREZGENE
PANTHER	TRNA-SPECIFIC ADENOSINE DEAMINASE 1	UniProtKB/TrEMBL
	TRNA-SPECIFIC ADENOSINE DEAMINASE 1	UniProtKB/TrEMBL
Pfam	A_deamin	UniProtKB/TrEMBL
PROSITE	A_DEAMIN_EDITASE	UniProtKB/TrEMBL
SMART	ADEAMc	UniProtKB/TrEMBL
UniProt	I3MW85	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-01-22	Adat1	adenosine deaminase tRNA specific 1		adenosine deaminase, tRNA specific 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar