Bphl (biphenyl hydrolase like) - Rat Genome Database

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Gene: Bphl (biphenyl hydrolase like) Ictidomys tridecemlineatus
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Symbol: Bphl
Name: biphenyl hydrolase like
RGD ID: 12569035
Description: ENCODES a protein that exhibits poly(ADP-ribose) glycohydrolase activity (ortholog); INVOLVED IN ATP generation from poly-ADP-D-ribose (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytosol (ortholog); nuclear body (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: biphenyl hydrolase like, transcript variant X1; biphenyl hydrolase like, transcript variant X2; valacyclovir hydrolase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494621,021,826 - 21,052,291 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365349,286,361 - 9,321,297 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365349,290,816 - 9,321,250 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)
mitochondrion  (IEA)
nuclear body  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
Bphl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494621,021,826 - 21,052,291 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365349,286,361 - 9,321,297 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365349,290,816 - 9,321,250 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BPHL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3863,118,376 - 3,153,578 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl63,118,374 - 3,153,578 (+)EnsemblGRCh38hg38GRCh38
GRCh3763,118,610 - 3,153,812 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3663,064,041 - 3,098,288 (+)NCBINCBI36Build 36hg18NCBI36
Build 3463,064,040 - 3,098,279NCBI
Celera64,347,797 - 4,382,302 (+)NCBICelera
Cytogenetic Map6p25.2NCBI
HuRef62,989,338 - 3,023,543 (+)NCBIHuRef
CHM1_163,118,825 - 3,153,324 (+)NCBICHM1_1
T2T-CHM13v2.062,986,415 - 3,020,798 (+)NCBIT2T-CHM13v2.0
Bphl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391334,221,611 - 34,258,055 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1334,221,580 - 34,258,057 (+)EnsemblGRCm39 Ensembl
GRCm381334,037,585 - 34,074,074 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1334,037,597 - 34,074,074 (+)EnsemblGRCm38mm10GRCm38
MGSCv371334,129,510 - 34,165,943 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361334,045,106 - 34,081,539 (+)NCBIMGSCv36mm8
Celera1335,167,133 - 35,203,461 (+)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1314.02NCBI
Bphl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81731,006,283 - 31,042,631 (-)NCBIGRCr8
mRatBN7.21730,800,939 - 30,837,277 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1730,799,629 - 30,837,288 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1730,614,893 - 30,651,139 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01732,218,639 - 32,254,884 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01730,610,637 - 30,646,883 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01731,498,877 - 31,535,172 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1731,498,883 - 31,535,172 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01733,392,063 - 33,428,242 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41737,143,275 - 37,181,166 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11737,146,050 - 37,184,007 (-)NCBI
Celera1730,365,214 - 30,401,448 (-)NCBICelera
Cytogenetic Map17p12NCBI
Bphl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546510,089,608 - 10,120,588 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546510,093,342 - 10,120,588 (-)NCBIChiLan1.0ChiLan1.0
BPHL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2517,749,382 - 17,786,539 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1613,739,388 - 13,786,846 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v062,946,472 - 2,993,624 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.163,049,546 - 3,083,169 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl63,049,549 - 3,083,169 (+)Ensemblpanpan1.1panPan2
BPHL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1353,411,293 - 3,448,036 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl353,411,349 - 3,448,207 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha353,419,160 - 3,455,953 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0353,468,115 - 3,504,964 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl353,468,084 - 3,505,076 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1353,343,388 - 3,380,171 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0353,365,265 - 3,402,172 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0354,697,906 - 4,734,680 (+)NCBIUU_Cfam_GSD_1.0
BPHL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl71,882,720 - 1,909,854 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.171,882,731 - 1,909,854 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.271,947,229 - 1,974,348 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BPHL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11769,030,127 - 69,062,807 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1769,026,511 - 69,062,728 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660443,046,043 - 3,078,796 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bphl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475621,763,058 - 21,788,432 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475621,762,752 - 21,790,825 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000001551   ⟹   ENSSTOP00000001388
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365349,286,361 - 9,321,297 (-)Ensembl
RefSeq Acc Id: XM_005327506   ⟹   XP_005327563
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494621,021,826 - 21,052,291 (-)NCBI
SpeTri2.0NW_0049365349,290,816 - 9,321,250 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021727875   ⟹   XP_021583550
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494621,021,826 - 21,052,065 (-)NCBI
SpeTri2.0NW_0049365349,290,816 - 9,321,101 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005327563 (Get FASTA)   NCBI Sequence Viewer  
  XP_021583550 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000001388.3
GenBank Protein KAG3288768 (Get FASTA)   NCBI Sequence Viewer  
  KAG3288769 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005327563   ⟸   XM_005327506
- Peptide Label: isoform X1
- UniProtKB: I3LYT0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021583550   ⟸   XM_021727875
- Peptide Label: isoform X2
- UniProtKB: I3LYT0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000001388   ⟸   ENSSTOT00000001551
Protein Domains
AB hydrolase-1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001554 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001551.3 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1820 UniProtKB/TrEMBL
InterPro AB_hydrolase UniProtKB/TrEMBL
  AB_hydrolase_1 UniProtKB/TrEMBL
NCBI Gene Bphl ENTREZGENE
PANTHER VALACYCLOVIR HYDROLASE UniProtKB/TrEMBL
  VALACYCLOVIR HYDROLASE UniProtKB/TrEMBL
Pfam Abhydrolase_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF53474 UniProtKB/TrEMBL
UniProt I3LYT0 ENTREZGENE, UniProtKB/TrEMBL