Bphl (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024404946 | 21,021,826 - 21,052,291 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936534 | 9,286,361 - 9,321,297 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936534 | 9,290,816 - 9,321,250 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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BPHL (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 6 | 3,118,376 - 3,153,578 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 6 | 3,118,374 - 3,153,578 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 6 | 3,118,610 - 3,153,812 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 6 | 3,064,041 - 3,098,288 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 6 | 3,064,040 - 3,098,279 | NCBI | | | | | Celera | 6 | 4,347,797 - 4,382,302 (+) | NCBI | | Celera | | | Cytogenetic Map | 6 | p25.2 | NCBI | | | | | HuRef | 6 | 2,989,338 - 3,023,543 (+) | NCBI | | HuRef | | | CHM1_1 | 6 | 3,118,825 - 3,153,324 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 6 | 2,986,415 - 3,020,798 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Bphl (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 13 | 34,221,611 - 34,258,055 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 13 | 34,221,580 - 34,258,057 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 13 | 34,037,585 - 34,074,074 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 13 | 34,037,597 - 34,074,074 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 13 | 34,129,510 - 34,165,943 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 13 | 34,045,106 - 34,081,539 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 13 | 35,167,133 - 35,203,461 (+) | NCBI | | Celera | | | Cytogenetic Map | 13 | A3.3 | NCBI | | | | | cM Map | 13 | 14.02 | NCBI | | | | |
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Bphl (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 17 | 31,006,283 - 31,042,631 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 17 | 30,800,939 - 30,837,277 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 17 | 30,799,629 - 30,837,288 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 17 | 30,614,893 - 30,651,139 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 17 | 32,218,639 - 32,254,884 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 17 | 30,610,637 - 30,646,883 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 17 | 31,498,877 - 31,535,172 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 17 | 31,498,883 - 31,535,172 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 17 | 33,392,063 - 33,428,242 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 17 | 37,143,275 - 37,181,166 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 17 | 37,146,050 - 37,184,007 (-) | NCBI | | | | | Celera | 17 | 30,365,214 - 30,401,448 (-) | NCBI | | Celera | | | Cytogenetic Map | 17 | p12 | NCBI | | | | |
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Bphl (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955465 | 10,089,608 - 10,120,588 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955465 | 10,093,342 - 10,120,588 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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BPHL (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 5 | 17,749,382 - 17,786,539 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 6 | 13,739,388 - 13,786,846 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 6 | 2,946,472 - 2,993,624 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 6 | 3,049,546 - 3,083,169 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 6 | 3,049,549 - 3,083,169 (+) | Ensembl | panpan1.1 | | panPan2 | |
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BPHL (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 35 | 3,411,293 - 3,448,036 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 35 | 3,411,349 - 3,448,207 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 35 | 3,419,160 - 3,455,953 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 35 | 3,468,115 - 3,504,964 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 35 | 3,468,084 - 3,505,076 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 35 | 3,343,388 - 3,380,171 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 35 | 3,365,265 - 3,402,172 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 35 | 4,697,906 - 4,734,680 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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BPHL (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 7 | 1,882,720 - 1,909,854 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 7 | 1,882,731 - 1,909,854 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 7 | 1,947,229 - 1,974,348 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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BPHL (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 17 | 69,030,127 - 69,062,807 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 17 | 69,026,511 - 69,062,728 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666044 | 3,046,043 - 3,078,796 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Bphl (Heterocephalus glaber - naked mole-rat) |
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