Rnase10 (ribonuclease A family member 10 (inactive)) - Rat Genome Database

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Gene: Rnase10 (ribonuclease A family member 10 (inactive)) Ictidomys tridecemlineatus
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Symbol: Rnase10
Name: ribonuclease A family member 10 (inactive)
RGD ID: 12568359
Description: ENCODES a protein that exhibits nucleic acid binding (inferred); INVOLVED IN epithelial cell morphogenesis (ortholog); heterotypic cell-cell adhesion (ortholog); male gonad development (ortholog); ASSOCIATED WITH purine nucleoside phosphorylase deficiency (ortholog); FOUND IN extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: inactive ribonuclease-like protein 10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864077,752,759 - 77,753,950 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936877732,012 - 734,868 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936877732,012 - 734,592 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rnase10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864077,752,759 - 77,753,950 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936877732,012 - 734,868 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936877732,012 - 734,592 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNASE10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381420,504,233 - 20,513,884 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1420,505,537 - 20,513,884 (+)EnsemblGRCh38hg38GRCh38
GRCh371420,972,392 - 20,982,043 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361420,048,471 - 20,049,121 (+)NCBINCBI36Build 36hg18NCBI36
Celera14839,505 - 840,155 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef141,099,688 - 1,100,338 (+)NCBIHuRef
CHM1_11420,980,647 - 20,981,297 (+)NCBICHM1_1
T2T-CHM13v2.01414,701,150 - 14,711,005 (+)NCBIT2T-CHM13v2.0
Rnase10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391451,245,208 - 51,248,218 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1451,245,208 - 51,248,215 (+)EnsemblGRCm39 Ensembl
GRCm381451,007,751 - 51,010,761 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1451,007,751 - 51,010,758 (+)EnsemblGRCm38mm10GRCm38
MGSCv371451,627,426 - 51,630,433 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361449,929,880 - 49,932,709 (+)NCBIMGSCv36mm8
Celera1447,284,967 - 47,287,974 (+)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1426.34NCBI
Rnase10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81526,700,219 - 26,702,681 (+)NCBIGRCr8
mRatBN7.21524,226,687 - 24,229,149 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1524,226,691 - 24,228,561 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1526,997,864 - 27,000,326 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01527,956,742 - 27,959,203 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01526,206,416 - 26,208,878 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01527,930,581 - 27,933,873 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1527,933,211 - 27,933,849 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01531,764,636 - 31,766,642 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41526,987,636 - 26,988,274 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11527,003,335 - 27,003,973 (+)NCBI
Celera1524,548,103 - 24,548,741 (+)NCBICelera
Cytogenetic Map15p14NCBI
Rnase10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555501,328,294 - 1,331,558 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555501,326,203 - 1,331,558 (+)NCBIChiLan1.0ChiLan1.0
RNASE10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21522,013,740 - 22,022,925 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11421,230,225 - 21,239,412 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0141,378,780 - 1,385,894 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11419,430,824 - 19,434,448 (+)NCBIpanpan1.1PanPan1.1panPan2
RNASE10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11517,845,687 - 17,908,672 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1517,840,091 - 17,844,406 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1517,840,091 - 17,844,406 (+)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1518,318,664 - 18,391,228 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01518,092,868 - 18,165,341 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1518,099,762 - 18,100,406 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11517,775,551 - 17,847,530 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01517,830,201 - 17,903,195 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01517,959,467 - 18,031,615 (+)NCBIUU_Cfam_GSD_1.0
RNASE10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl778,391,475 - 78,394,035 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1778,390,612 - 78,414,401 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2783,418,433 - 83,440,160 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RNASE10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12921,029,470 - 21,034,108 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2921,033,443 - 21,034,078 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605925,395,604 - 25,400,909 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnase10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248254,655,122 - 4,655,772 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248254,653,995 - 4,664,793 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005341408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010003700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000012478   ⟹   ENSSTOP00000011183
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936877732,012 - 734,868 (+)Ensembl
RefSeq Acc Id: XM_005341408   ⟹   XP_005341465
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864077,752,759 - 77,753,950 (+)NCBI
SpeTri2.0NW_004936877732,012 - 734,592 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005341465 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000011183.2
GenBank Protein KAG3261485 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005341465   ⟸   XM_005341408
- UniProtKB: I3MJ83 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000011183   ⟸   ENSSTOT00000012478
Protein Domains
Ribonuclease A-domain


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012478 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012478.3 UniProtKB/TrEMBL
Gene3D-CATH 3.10.130.10 UniProtKB/TrEMBL
InterPro RNaseA UniProtKB/TrEMBL
  RNaseA-like_dom_sf UniProtKB/TrEMBL
  RNaseA_domain UniProtKB/TrEMBL
NCBI Gene Rnase10 ENTREZGENE
PANTHER INACTIVE RIBONUCLEASE-LIKE PROTEIN 10 UniProtKB/TrEMBL
  PTHR11437 UniProtKB/TrEMBL
Pfam RnaseA UniProtKB/TrEMBL
PRINTS RIBONUCLEASE UniProtKB/TrEMBL
SMART RNAse_Pc UniProtKB/TrEMBL
Superfamily-SCOP SSF54076 UniProtKB/TrEMBL
UniProt I3MJ83 ENTREZGENE, UniProtKB/TrEMBL