Tnfsf14 (TNF superfamily member 14) - Rat Genome Database

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Gene: Tnfsf14 (TNF superfamily member 14) Ictidomys tridecemlineatus
Analyze
Symbol: Tnfsf14
Name: TNF superfamily member 14
RGD ID: 12568348
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN positive regulation of myoblast differentiation (ortholog); positive regulation of myoblast fusion (ortholog); positive regulation of T cell chemotaxis (ortholog); ASSOCIATED WITH genetic disease (ortholog); mucolipidosis type IV (ortholog); multiple sclerosis (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: TNF superfamily member 14, transcript variant X1; TNF superfamily member 14, transcript variant X2; TNF superfamily member 14, transcript variant X3; tumor necrosis factor ligand superfamily member 14; tumor necrosis factor superfamily member 14
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118213,854,848 - 213,859,307 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365883,976,492 - 3,979,825 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365883,976,492 - 3,979,825 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Tnfsf14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118213,854,848 - 213,859,307 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365883,976,492 - 3,979,825 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365883,976,492 - 3,979,825 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFSF14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38196,661,253 - 6,670,588 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl196,661,253 - 6,670,588 (-)EnsemblGRCh38hg38GRCh38
GRCh37196,661,264 - 6,670,599 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36196,615,560 - 6,621,599 (-)NCBINCBI36Build 36hg18NCBI36
Build 34196,615,565 - 6,621,599NCBI
Celera196,604,701 - 6,612,155 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef196,425,122 - 6,432,649 (-)NCBIHuRef
CHM1_1196,663,409 - 6,670,848 (-)NCBICHM1_1
T2T-CHM13v2.0196,650,888 - 6,660,217 (-)NCBIT2T-CHM13v2.0
Tnfsf14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391757,496,437 - 57,501,182 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1757,496,492 - 57,501,177 (-)EnsemblGRCm39 Ensembl
GRCm381757,189,474 - 57,194,181 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1757,189,492 - 57,194,177 (-)EnsemblGRCm38mm10GRCm38
MGSCv371757,328,915 - 57,333,612 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361756,874,827 - 56,889,591 (-)NCBIMGSCv36mm8
Celera1761,538,038 - 61,542,735 (-)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.71NCBI
Tnfsf14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr892,155,270 - 2,160,100 (-)NCBIGRCr8
mRatBN7.292,068,295 - 2,073,128 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl92,069,104 - 2,073,216 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx92,497,352 - 2,501,003 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,846,726 - 7,850,377 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,802,581 - 6,806,232 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.099,761,363 - 9,765,461 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl99,761,536 - 9,765,186 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.098,768,631 - 8,772,649 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera96,447,405 - 6,451,055 (+)NCBICelera
Cytogenetic Map9q11NCBI
Tnfsf14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554952,829,402 - 2,835,335 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554952,829,314 - 2,834,826 (+)NCBIChiLan1.0ChiLan1.0
TNFSF14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22011,074,535 - 11,081,518 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11910,299,977 - 10,306,862 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0195,691,648 - 5,700,935 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1196,614,372 - 6,621,763 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl196,614,378 - 6,621,763 (-)Ensemblpanpan1.1panPan2
TNFSF14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12053,604,101 - 53,607,522 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2053,603,709 - 53,607,522 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2053,351,781 - 53,355,064 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02054,258,226 - 54,261,513 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2054,258,091 - 54,261,536 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12053,325,114 - 53,328,394 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02053,773,591 - 53,776,865 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02054,002,586 - 54,005,871 (+)NCBIUU_Cfam_GSD_1.0
TNFSF14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl272,473,477 - 72,483,989 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1272,478,178 - 72,483,885 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2272,993,336 - 72,998,023 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TNFSF14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.166,235,641 - 6,241,706 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl66,236,193 - 6,241,311 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660811,755,097 - 1,764,021 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnfsf14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248283,763,849 - 3,770,500 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000024349   ⟹   ENSSTOP00000017065
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365883,976,492 - 3,979,825 (-)Ensembl
RefSeq Acc Id: XM_005332093   ⟹   XP_005332150
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118213,854,848 - 213,859,307 (+)NCBI
SpeTri2.0NW_0049365883,976,492 - 3,979,825 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005332150 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000017065.2
GenBank Protein KAG3280581 (Get FASTA)   NCBI Sequence Viewer  
  KAG3280582 (Get FASTA)   NCBI Sequence Viewer  
  KAG3280583 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005332150   ⟸   XM_005332093
- UniProtKB: I3MY69 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000017065   ⟸   ENSSTOT00000024349
Protein Domains
TNF family profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000021016 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024349.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.40 UniProtKB/TrEMBL
InterPro TNF_dom UniProtKB/TrEMBL
  Tumour_necrosis_fac-like_dom UniProtKB/TrEMBL
NCBI Gene Tnfsf14 ENTREZGENE
PANTHER TUMOR NECROSIS FACTOR FAMILY MEMBER UniProtKB/TrEMBL
  TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 14 UniProtKB/TrEMBL
Pfam TNF UniProtKB/TrEMBL
PROSITE TNF_2 UniProtKB/TrEMBL
SMART TNF UniProtKB/TrEMBL
Superfamily-SCOP SSF49842 UniProtKB/TrEMBL
UniProt I3MY69 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-08 Tnfsf14  TNF superfamily member 14    tumor necrosis factor superfamily member 14  Symbol and/or name change 5135510 APPROVED