Megf10 (multiple EGF like domains 10) - Rat Genome Database

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Gene: Megf10 (multiple EGF like domains 10) Ictidomys tridecemlineatus
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Symbol: Megf10
Name: multiple EGF like domains 10
RGD ID: 12567366
Description: ENCODES a protein that exhibits complement component C1q complex binding (ortholog); Notch binding (ortholog); scavenger receptor activity (ortholog); INVOLVED IN apoptotic process involved in development (ortholog); engulfment of apoptotic cell (ortholog); homotypic cell-cell adhesion (ortholog); ASSOCIATED WITH Deglutition Disorders (ortholog); early-onset myopathy-areflexia-respiratory distress-dysphagia syndrome (ortholog); familial adenomatous polyposis 1 (ortholog); FOUND IN phagocytic cup (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: multiple EGF like domains 10, transcript variant X1; multiple EGF like domains 10, transcript variant X2; multiple epidermal growth factor-like domains protein 10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213139,012,245 - 139,182,163 (+)NCBI
SpeTri2.0NW_004936504634,167 - 753,438 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Megf10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213139,012,245 - 139,182,163 (+)NCBI
SpeTri2.0NW_004936504634,167 - 753,438 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MEGF10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5127,290,796 - 127,465,737 (+)EnsemblGRCh38hg38GRCh38
GRCh385127,229,519 - 127,461,222 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh375126,626,488 - 126,796,914 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365126,654,514 - 126,824,807 (+)NCBINCBI36hg18NCBI36
Celera5122,757,239 - 122,927,674 (+)NCBI
Cytogenetic Map5q23.2NCBI
HuRef5121,817,526 - 121,988,151 (+)NCBIHuRef
CHM1_15126,059,059 - 126,229,496 (+)NCBICHM1_1
Megf10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391857,266,162 - 57,430,539 (+)NCBIGRCm39mm39
GRCm39 Ensembl1857,266,162 - 57,430,539 (+)Ensembl
GRCm381857,133,090 - 57,297,467 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1857,133,090 - 57,297,467 (+)EnsemblGRCm38mm10GRCm38
MGSCv371857,292,744 - 57,457,121 (+)NCBIGRCm37mm9NCBIm37
MGSCv361857,258,844 - 57,422,835 (+)NCBImm8
Celera1858,443,454 - 58,608,465 (+)NCBICelera
Cytogenetic Map18D3NCBI
Megf10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21850,605,231 - 50,755,441 (+)NCBI
Rnor_6.0 Ensembl1852,215,682 - 52,366,238 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01852,215,652 - 52,366,212 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01851,403,811 - 51,554,336 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41852,948,935 - 53,051,823 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11853,052,380 - 53,072,113 (+)NCBI
Celera1848,786,696 - 48,889,249 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
Megf10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955415335,012 - 513,891 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955415393,642 - 513,157 (+)NCBIChiLan1.0ChiLan1.0
MEGF10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15128,466,095 - 128,657,845 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5128,466,095 - 128,641,043 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05122,639,155 - 122,877,324 (+)NCBIMhudiblu_PPA_v0panPan3
MEGF10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11116,359,648 - 16,574,882 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1116,378,669 - 16,617,335 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1115,047,444 - 15,360,462 (+)NCBI
ROS_Cfam_1.01116,981,258 - 17,301,745 (+)NCBI
UMICH_Zoey_3.11115,711,146 - 16,024,958 (+)NCBI
UNSW_CanFamBas_1.01115,557,940 - 15,871,023 (+)NCBI
UU_Cfam_GSD_1.01116,155,094 - 16,474,941 (+)NCBI
MEGF10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.12130,226,222 - 130,403,960 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22135,524,848 - 135,686,689 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MEGF10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12330,028,154 - 30,405,033 (+)NCBI
ChlSab1.1 Ensembl2330,234,489 - 30,404,996 (+)Ensembl
Vero_WHO_p1.0NW_02366603447,643,480 - 48,026,869 (-)NCBI
Megf10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477414,147,412 - 14,354,886 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005324140   ⟹   XP_005324197
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213139,012,245 - 139,182,163 (+)NCBI
SpeTri2.0NW_004936504634,167 - 753,438 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021725667   ⟹   XP_021581342
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_004936504634,168 - 753,438 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040271873   ⟹   XP_040127807
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213139,020,741 - 139,182,163 (+)NCBI
RefSeq Acc Id: XM_040271874   ⟹   XP_040127808
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213139,020,738 - 139,178,135 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005324197 (Get FASTA)   NCBI Sequence Viewer  
  XP_040127807 (Get FASTA)   NCBI Sequence Viewer  
  XP_040127808 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3265935 (Get FASTA)   NCBI Sequence Viewer  
  KAG3265936 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005324197   ⟸   XM_005324140
- Peptide Label: isoform X2
- UniProtKB: I3MES9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021581342   ⟸   XM_021725667
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040127808   ⟸   XM_040271874
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040127807   ⟸   XM_040271873
- Peptide Label: isoform X1
Protein Domains
EGF-like   EMI


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010069 ENTREZGENE
Ensembl Protein ENSSTOP00000009047 ENTREZGENE
NCBI Gene Megf10 ENTREZGENE
UniProt I3MES9 ENTREZGENE