Myl1 (myosin light chain 1) - Rat Genome Database

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Gene: Myl1 (myosin light chain 1) Ictidomys tridecemlineatus
Analyze
Symbol: Myl1
Name: myosin light chain 1
RGD ID: 12566092
Description: ENCODES a protein that exhibits calcium ion binding (inferred); structural constituent of muscle (inferred); INVOLVED IN cardiac muscle contraction (ortholog); ASSOCIATED WITH congenital myopathy 14 (ortholog); genetic disease (ortholog); Heart Injuries (ortholog); FOUND IN contractile muscle fiber (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myosin light chain 1, transcript variant X1; myosin light chain 1, transcript variant X2; myosin light chain 1/3, skeletal muscle isoform
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303166,612,434 - 166,632,566 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365865,993,098 - 6,013,994 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365865,993,177 - 6,013,426 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Myl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303166,612,434 - 166,632,566 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365865,993,098 - 6,013,994 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365865,993,177 - 6,013,426 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382210,290,150 - 210,315,174 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2210,290,150 - 210,315,174 (-)EnsemblGRCh38hg38GRCh38
GRCh372211,154,874 - 211,179,898 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362210,863,113 - 210,888,140 (-)NCBINCBI36Build 36hg18NCBI36
Build 342210,980,382 - 210,993,845NCBI
Celera2204,922,877 - 204,947,923 (-)NCBICelera
Cytogenetic Map2q34NCBI
HuRef2203,000,114 - 203,025,138 (-)NCBIHuRef
CHM1_12211,160,958 - 211,186,022 (-)NCBICHM1_1
T2T-CHM13v2.02210,770,853 - 210,795,901 (-)NCBIT2T-CHM13v2.0
Myl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39166,963,454 - 66,987,091 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl166,963,454 - 66,984,563 (-)EnsemblGRCm39 Ensembl
GRCm38166,924,295 - 66,947,932 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl166,924,295 - 66,945,404 (-)EnsemblGRCm38mm10GRCm38
MGSCv37166,970,869 - 66,991,630 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36166,857,506 - 66,878,240 (-)NCBIMGSCv36mm8
Celera167,442,110 - 67,462,688 (-)NCBICelera
Cytogenetic Map1C3NCBI
cM Map133.71NCBI
Myl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2968,437,514 - 68,458,256 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl968,437,517 - 68,458,261 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx976,926,694 - 76,947,188 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0982,055,627 - 82,076,116 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0980,461,970 - 80,482,459 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0973,937,820 - 73,958,480 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl973,937,823 - 73,958,480 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0973,349,226 - 73,369,886 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4965,717,097 - 65,737,576 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera965,916,653 - 65,937,125 (-)NCBICelera
Cytogenetic Map9q32NCBI
Myl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554575,146,633 - 5,168,356 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554575,147,443 - 5,167,587 (+)NCBIChiLan1.0ChiLan1.0
MYL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213112,913,613 - 112,938,932 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B112,928,593 - 112,953,912 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B97,548,013 - 97,573,336 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B215,940,808 - 215,974,852 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B215,950,087 - 215,974,852 (-)Ensemblpanpan1.1panPan2
MYL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13718,143,644 - 18,168,208 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3718,143,673 - 18,168,187 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3719,024,436 - 19,048,975 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03718,081,858 - 18,106,400 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3718,050,944 - 18,106,386 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13718,034,367 - 18,058,915 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03717,996,703 - 18,021,269 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03718,011,588 - 18,036,161 (-)NCBIUU_Cfam_GSD_1.0
MYL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15113,036,228 - 113,063,321 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115113,038,083 - 113,051,315 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215124,861,888 - 124,875,123 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap15q23-q26NCBI
MYL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11096,015,186 - 96,041,862 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1096,015,034 - 96,029,160 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040103,314,602 - 103,340,346 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Myl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247655,883,524 - 5,904,179 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247655,883,908 - 5,903,759 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000003462   ⟹   ENSSTOP00000003097
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365866,003,275 - 6,013,994 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000019847   ⟹   ENSSTOP00000016986
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365865,993,098 - 6,013,994 (+)Ensembl
RefSeq Acc Id: XM_005331869   ⟹   XP_005331926
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303166,612,434 - 166,632,566 (-)NCBI
SpeTri2.0NW_0049365865,993,177 - 6,013,426 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005331870   ⟹   XP_005331927
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303166,612,434 - 166,622,529 (-)NCBI
SpeTri2.0NW_0049365866,003,349 - 6,013,426 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005331926 (Get FASTA)   NCBI Sequence Viewer  
  XP_005331927 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003097.3
  ENSSTOP00000016986.2
GenBank Protein KAG3275144 (Get FASTA)   NCBI Sequence Viewer  
  KAG3275145 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005331926   ⟸   XM_005331869
- Peptide Label: isoform X1
- UniProtKB: I3MXZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005331927   ⟸   XM_005331870
- Peptide Label: isoform X2
- UniProtKB: I3M2B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000003097   ⟸   ENSSTOT00000003462
RefSeq Acc Id: ENSSTOP00000016986   ⟸   ENSSTOT00000019847
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003469 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003462.3 UniProtKB/TrEMBL
  ENSSTOT00000019847.2 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
NCBI Gene Myl1 ENTREZGENE
PANTHER MYOSIN LIGHT CHAIN 1, 3 UniProtKB/TrEMBL
  MYOSIN LIGHT CHAIN 1/3, SKELETAL MUSCLE ISOFORM UniProtKB/TrEMBL
Pfam EF-hand_6 UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt I3M2B6 ENTREZGENE, UniProtKB/TrEMBL
  I3MXZ1 ENTREZGENE, UniProtKB/TrEMBL