Ccdc188 (coiled-coil domain containing 188)

Gene: Ccdc188 (coiled-coil domain containing 188) Ictidomys tridecemlineatus

Analyze

Symbol:

Ccdc188

Name:

coiled-coil domain containing 188

RGD ID:

12565580

Description:

ASSOCIATED WITH autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); chromosome 22q11.2 microduplication syndrome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

coiled-coil domain-containing protein 188; uncharacterized protein LOC106145165

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	138,702,990 - 138,707,429 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936619	4,048,686 - 4,049,853 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

chromosome 22q11.2 deletion syndrome, distal (ISO)

chromosome 22q11.2 microduplication syndrome (ISO)

DiGeorge syndrome (ISO)

schizophrenia (ISO)

velocardiofacial syndrome (ISO)

References

Genomics

Comparative Map Data

Ccdc188
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	138,702,990 - 138,707,429 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936619	4,048,686 - 4,049,853 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC188
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	20,148,416 - 20,151,055 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	20,148,416 - 20,151,055 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	20,135,939 - 20,138,578 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	18,515,950 - 18,531,131 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	22	3,988,159 - 3,989,475 (-)	NCBI		Celera
Cytogenetic Map	22	q11.21	NCBI
HuRef	22	3,756,722 - 3,758,044 (-)	NCBI		HuRef
CHM1_1	22	20,135,800 - 20,137,122 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	20,527,451 - 20,534,406 (-)	NCBI		T2T-CHM13v2.0

Ccdc188
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	18,032,091 - 18,038,211 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	18,035,743 - 18,038,212 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	18,214,227 - 18,220,347 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	18,217,879 - 18,220,348 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	18,217,972 - 18,220,440 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv37	16	18,217,972 - 18,220,440 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	18,131,026 - 18,133,910 (+)	NCBI		MGSCv36	mm8
Celera	16	18,786,973 - 18,793,093 (+)	NCBI		Celera
Cytogenetic Map	16	A3	NCBI
cM Map	16	11.29	NCBI

Ccdc188
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	96,273,615 - 96,276,496 (-)	NCBI		GRCr8
mRatBN7.2	11	82,769,735 - 82,772,062 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	82,769,473 - 82,772,114 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	11	86,917,349 - 86,920,091 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	86,917,667 - 86,920,094 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	90,011,605 - 90,014,043 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	11	81,546,278 - 81,549,021 (-)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

Ccdc188
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955442	17,962,249 - 17,965,261 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCDC188
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	29,775,452 - 29,778,774 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	32,322,329 - 32,329,851 (-)	NCBI		NHGRI_mPanPan1
PanPan1.1	22	18,580,908 - 18,585,074 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	18,582,301 - 18,585,074 (-)	Ensembl	panpan1.1		panPan2

CCDC188
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	29,189,736 - 29,194,606 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	29,189,880 - 29,192,286 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	29,148,736 - 29,153,598 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	30,593,855 - 30,598,718 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	30,593,995 - 30,597,011 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	28,641,702 - 28,646,564 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	28,267,066 - 28,271,929 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	29,352,051 - 29,356,910 (+)	NCBI		UU_Cfam_GSD_1.0

CCDC188
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	51,517,234 - 51,520,622 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	51,517,669 - 51,520,622 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	55,155,083 - 55,157,538 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC188
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	5,589,399 - 5,592,135 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666085	1,343,097 - 1,346,005 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc188
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624747	756,298 - 759,056 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013362488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040291069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040291070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040291071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040291072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040291073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040291074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040291075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_013362488 ⟹ XP_013217942

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	138,702,994 - 138,705,505 (+)	NCBI
SpeTri2.0	NW_004936619	4,048,686 - 4,049,853 (-)	NCBI

Sequence:

show sequence

ATGGCCATCACCGAGGTATGGGACGGTGTGGCCGAGGTACACATGGCTCTGAACAACCAGGCCA
CTGGGCTCCTGAACCTCAAGAAGGACATCCGGGGCGTGCTAGAGCAGATGGAGGACATTCAGCT
GGAGATTCTGGGGGAGCGGGCCCAGTGCCGCACCCAGGCCAGGAAGGAGCAACAGATGGAGTGC
ACAGAGAAAGGGAGGCCACAGCTGGAATGTTCCGAGGGCCTCAAGGGCCAGCTCTGGCTGCTGG
CCCTGAGGCTGCTACTGGGCGCCCTGCTGGCCTGCACCGCTGCCTACGTGTACGTGGTGGACCC
CGCACCCTTCGAGGGGCTAGTGCCGCCCCTGATGAGCCGAGCCGCCGTCTGGAAGCTCCGGGCC
CTACTGGGCCCCTTCCTGCGCCTCGAGGTGGACGACTTCCTGCCCTTCTAG

hide sequence

RefSeq Acc Id:

XM_040291069 ⟹ XP_040147003

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	138,702,990 - 138,705,928 (+)	NCBI

RefSeq Acc Id:

XM_040291070 ⟹ XP_040147004

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	138,702,990 - 138,706,369 (+)	NCBI

RefSeq Acc Id:

XM_040291071 ⟹ XP_040147005

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	138,702,991 - 138,707,429 (+)	NCBI

RefSeq Acc Id:

XM_040291072 ⟹ XP_040147006

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	138,702,992 - 138,706,304 (+)	NCBI

RefSeq Acc Id:

XM_040291073 ⟹ XP_040147007

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	138,702,996 - 138,705,579 (+)	NCBI

RefSeq Acc Id:

XM_040291074 ⟹ XP_040147008

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	138,702,997 - 138,707,391 (+)	NCBI

RefSeq Acc Id:

XM_040291075 ⟹ XP_040147009

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	138,702,997 - 138,705,928 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_013217942	(Get FASTA)	NCBI Sequence Viewer
	XP_040147003	(Get FASTA)	NCBI Sequence Viewer
	XP_040147004	(Get FASTA)	NCBI Sequence Viewer
	XP_040147005	(Get FASTA)	NCBI Sequence Viewer
	XP_040147006	(Get FASTA)	NCBI Sequence Viewer
	XP_040147007	(Get FASTA)	NCBI Sequence Viewer
	XP_040147008	(Get FASTA)	NCBI Sequence Viewer
	XP_040147009	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	KAG3278622	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_013217942 ⟸ XM_013362488
- Peptide Label:	isoform X4
- Sequence:	show sequence MAITEVWDGVAEVHMALNNQATGLLNLKKDIRGVLEQMEDIQLEILGERAQCRTQARKEQQMEC TEKGRPQLECSEGLKGQLWLLALRLLLGALLACTAAYVYVVDPAPFEGLVPPLMSRAAVWKLRA LLGPFLRLEVDDFLPF hide sequence

RefSeq Acc Id:	XP_040147004 ⟸ XM_040291070
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040147003 ⟸ XM_040291069
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_040147005 ⟸ XM_040291071
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_040147006 ⟸ XM_040291072
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_040147007 ⟸ XM_040291073
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_040147008 ⟸ XM_040291074
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_040147009 ⟸ XM_040291075
- Peptide Label:	isoform X8

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	Ccdc188	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar