Acsl1 (acyl-CoA synthetase long chain family member 1) - Rat Genome Database

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Gene: Acsl1 (acyl-CoA synthetase long chain family member 1) Ictidomys tridecemlineatus
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Symbol: Acsl1
Name: acyl-CoA synthetase long chain family member 1
RGD ID: 12565403
Description: ENCODES a protein that exhibits arachidonate-CoA ligase activity (ortholog); long-chain fatty acid-CoA ligase activity (ortholog); oleoyl-CoA ligase activity (ortholog); INVOLVED IN adiponectin-activated signaling pathway (ortholog); fatty acid metabolic process (ortholog); fatty acid transport (ortholog); PARTICIPATES IN adrenoleukodystrophy pathway; carnitine palmitoyltransferase I deficiency pathway; carnitine-acylcarnitine translocase deficiency; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN endoplasmic reticulum (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: acyl-CoA synthetase long-chain family member 1; long-chain-fatty-acid--CoA ligase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494333,625,129 - 33,684,355 (-)NCBI
SpeTri2.0NW_0049365544,425,518 - 4,484,853 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Acsl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494333,625,129 - 33,684,355 (-)NCBI
SpeTri2.0NW_0049365544,425,518 - 4,484,853 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACSL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4184,755,595 - 184,826,818 (-)EnsemblGRCh38hg38GRCh38
GRCh384184,755,595 - 184,826,593 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh374185,676,749 - 185,747,122 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364185,913,743 - 185,984,209 (-)NCBINCBI36hg18NCBI36
Build 344186,051,898 - 186,122,364NCBI
Celera4183,005,275 - 183,075,742 (-)NCBI
Cytogenetic Map4q35.1NCBI
HuRef4181,430,075 - 181,478,058 (-)NCBIHuRef
CHM1_14185,652,944 - 185,723,638 (-)NCBICHM1_1
Acsl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39846,924,074 - 46,989,088 (+)NCBIGRCm39mm39
GRCm39 Ensembl846,924,074 - 46,989,088 (+)Ensembl
GRCm38846,471,037 - 46,536,051 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl846,471,037 - 46,536,051 (+)EnsemblGRCm38mm10GRCm38
MGSCv37847,556,396 - 47,621,404 (+)NCBIGRCm37mm9NCBIm37
MGSCv36847,969,859 - 48,034,867 (+)NCBImm8
Celera849,153,706 - 49,218,586 (+)NCBICelera
Cytogenetic Map8B1.1NCBI
Acsl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21645,755,246 - 45,821,541 (-)NCBI
Rnor_6.0 Ensembl1648,937,456 - 49,003,246 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01648,937,456 - 49,003,898 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01648,653,023 - 48,719,250 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41649,036,892 - 49,081,416 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11649,036,966 - 49,081,491 (-)NCBI
Celera1643,758,263 - 43,802,634 (-)NCBICelera
Cytogenetic Map16q11NCBI
Acsl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540324,190,674 - 24,236,780 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540324,190,674 - 24,235,354 (+)NCBIChiLan1.0ChiLan1.0
ACSL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14189,145,403 - 189,216,458 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4189,145,403 - 189,198,646 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04176,920,811 - 176,991,495 (-)NCBIMhudiblu_PPA_v0panPan3
ACSL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11645,735,675 - 45,806,235 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1645,735,703 - 45,804,970 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1646,229,060 - 46,299,523 (+)NCBI
ROS_Cfam_1.01647,951,751 - 48,022,201 (+)NCBI
UMICH_Zoey_3.11645,918,792 - 45,989,322 (+)NCBI
UNSW_CanFamBas_1.01646,531,804 - 46,602,185 (+)NCBI
UU_Cfam_GSD_1.01646,664,118 - 46,734,659 (+)NCBI
ACSL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1545,866,851 - 46,090,099 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11545,866,858 - 45,936,327 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21552,526,606 - 52,595,992 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACSL1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17130,712,633 - 130,783,360 (-)NCBI
ChlSab1.1 Ensembl7130,712,308 - 130,763,756 (-)Ensembl
Vero_WHO_p1.0NW_023666037110,965,130 - 111,036,287 (-)NCBI
Acsl1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476915,503,757 - 15,584,741 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005329220   ⟹   XP_005329277
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494333,625,129 - 33,684,355 (-)NCBI
SpeTri2.0NW_0049365544,425,518 - 4,483,370 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013360283   ⟹   XP_013215737
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365544,443,093 - 4,484,853 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013360284   ⟹   XP_013215738
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494333,626,714 - 33,666,506 (-)NCBI
SpeTri2.0NW_0049365544,443,444 - 4,484,853 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040294385   ⟹   XP_040150319
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494333,626,612 - 33,671,041 (-)NCBI
RefSeq Acc Id: XM_040294386   ⟹   XP_040150320
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494333,626,612 - 33,684,029 (-)NCBI
RefSeq Acc Id: XM_040294392   ⟹   XP_040150326
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494333,626,612 - 33,668,249 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005329277   ⟸   XM_005329220
- Peptide Label: isoform X1
- UniProtKB: I3MCT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013215737   ⟸   XM_013360283
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013215738   ⟸   XM_013360284
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040150320   ⟸   XM_040294386
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040150319   ⟸   XM_040294385
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040150326   ⟸   XM_040294392
- Peptide Label: isoform X1
Protein Domains
AMP-binding   AMP-binding_C


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009009 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000008094 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009032 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.12780 UniProtKB/TrEMBL
InterPro AMP-bd_C UniProtKB/TrEMBL
  AMP-binding_CS UniProtKB/TrEMBL
  AMP-dep_Synth/Lig UniProtKB/TrEMBL
  AMP-dep_Synthh-like_sf UniProtKB/TrEMBL
NCBI Gene Acsl1 ENTREZGENE
Pfam AMP-binding UniProtKB/TrEMBL
  AMP-binding_C UniProtKB/TrEMBL
PROSITE AMP_BINDING UniProtKB/TrEMBL
UniProt I3MCT6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-20 Acsl1  acyl-CoA synthetase long chain family member 1    acyl-CoA synthetase long-chain family member 1  Symbol and/or name change 5135510 APPROVED