Fkbp9 (FKBP prolyl isomerase 9) - Rat Genome Database

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Gene: Fkbp9 (FKBP prolyl isomerase 9) Ictidomys tridecemlineatus
Analyze
Symbol: Fkbp9
Name: FKBP prolyl isomerase 9
RGD ID: 12565253
Description: ENCODES a protein that exhibits calcium ion binding (inferred); isomerase activity (inferred); peptidyl-prolyl cis-trans isomerase activity (inferred); INVOLVED IN protein folding (inferred); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN endoplasmic reticulum (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FK506 binding protein 9; peptidyl-prolyl cis-trans isomerase FKBP9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511889,522,521 - 89,571,118 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364788,734,066 - 8,783,594 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364788,734,154 - 8,782,624 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Fkbp9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511889,522,521 - 89,571,118 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364788,734,066 - 8,783,594 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364788,734,154 - 8,782,624 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FKBP9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38732,957,440 - 33,006,928 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl732,957,404 - 33,006,930 (+)EnsemblGRCh38hg38GRCh38
GRCh37732,997,052 - 33,046,540 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36732,963,577 - 33,013,067 (+)NCBINCBI36Build 36hg18NCBI36
Build 34732,770,291 - 32,819,782NCBI
Celera732,978,679 - 33,028,367 (+)NCBICelera
Cytogenetic Map7p14.3NCBI
HuRef732,875,703 - 32,925,786 (+)NCBIHuRef
CHM1_1732,996,888 - 33,046,420 (+)NCBICHM1_1
T2T-CHM13v2.0733,097,034 - 33,146,534 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2733,041,528 - 33,091,087 (+)NCBI
Fkbp9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39656,809,044 - 56,856,345 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl656,809,044 - 56,856,343 (+)EnsemblGRCm39 Ensembl
GRCm38656,832,059 - 56,879,360 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl656,832,059 - 56,879,358 (+)EnsemblGRCm38mm10GRCm38
MGSCv37656,782,053 - 56,829,354 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36656,761,655 - 56,808,936 (+)NCBIMGSCv36mm8
Celera657,594,709 - 57,641,203 (+)NCBICelera
Cytogenetic Map6B3NCBI
cM Map627.74NCBI
Fkbp9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8487,436,439 - 87,486,909 (+)NCBIGRCr8
mRatBN7.2486,106,256 - 86,156,723 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl486,106,282 - 86,156,721 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx491,340,517 - 91,397,794 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0487,115,947 - 87,173,221 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0485,516,830 - 85,567,211 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0487,167,514 - 87,234,198 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl487,167,514 - 87,234,197 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04151,819,739 - 151,885,188 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4485,816,060 - 85,865,958 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera480,935,822 - 80,986,438 (+)NCBICelera
Cytogenetic Map4q24NCBI
Fkbp9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955617201,944 - 237,048 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955617196,845 - 234,431 (+)NCBIChiLan1.0ChiLan1.0
FKBP9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2637,750,300 - 37,799,639 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1786,074,040 - 86,124,372 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0733,553,683 - 33,601,535 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1733,955,375 - 34,002,615 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl733,955,369 - 34,002,615 (+)Ensemblpanpan1.1panPan2
FKBP9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11445,028,741 - 45,069,005 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1445,028,387 - 45,068,167 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1444,463,122 - 44,504,123 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01444,966,667 - 45,007,948 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1444,966,661 - 45,007,948 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11445,071,182 - 45,112,433 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01444,753,069 - 44,794,304 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01445,127,015 - 45,168,183 (+)NCBIUU_Cfam_GSD_1.0
FKBP9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1840,481,565 - 40,532,262 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11840,486,371 - 40,532,259 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21844,428,675 - 44,474,795 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FKBP9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12125,416,827 - 25,467,946 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2125,416,119 - 25,467,673 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604281,325,784 - 81,378,196 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fkbp9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248962,935,941 - 2,963,772 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248962,940,537 - 2,967,821 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005319180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000029905   ⟹   ENSSTOP00000018441
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364788,734,066 - 8,783,594 (+)Ensembl
RefSeq Acc Id: XM_005319180   ⟹   XP_005319237
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511889,522,521 - 89,571,118 (+)NCBI
SpeTri2.0NW_0049364788,734,154 - 8,782,624 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005319237 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000018441.1
GenBank Protein KAG3278120 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005319237   ⟸   XM_005319180
- UniProtKB: I3N245 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000018441   ⟸   ENSSTOT00000029905
Protein Domains
EF-hand   PPIase FKBP-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000019843 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029905.2 UniProtKB/TrEMBL
Gene3D-CATH 3.10.50.40 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  PPIase_dom_sf UniProtKB/TrEMBL
  PPIase_FKBP_dom UniProtKB/TrEMBL
NCBI Gene Fkbp9 ENTREZGENE
PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP9 UniProtKB/TrEMBL
  PTHR46046 UniProtKB/TrEMBL
Pfam FKBP_C UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/TrEMBL
  FKBP_PPIASE UniProtKB/TrEMBL
Superfamily-SCOP FKBP-like UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
UniProt I3N245 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-11-06 Fkbp9  FKBP prolyl isomerase 9    FK506 binding protein 9  Symbol and/or name change 5135510 APPROVED