Olfm2 (olfactomedin 2) - Rat Genome Database

Name: Olfm2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Olfm2 (olfactomedin 2) Ictidomys tridecemlineatus

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Symbol:

Olfm2

Name:

olfactomedin 2

RGD ID:

12565097

Description:

INVOLVED IN locomotory behavior (ortholog); neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); protein secretion (ortholog); ASSOCIATED WITH autistic disorder (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); extrinsic component of postsynaptic density membrane (ortholog); glutamatergic synapse (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

noelin-2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	OLFM2 (olfactomedin 2)	NCBI	Ortholog
Mus musculus (house mouse):	Olfm2 (olfactomedin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Olfm2 (olfactomedin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Olfm2 (olfactomedin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	OLFM2 (olfactomedin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	OLFM2 (olfactomedin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	OLFM2 (olfactomedin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	OLFM2 (olfactomedin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Olfm2 (olfactomedin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	209,969,055 - 210,029,710 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936659	325,436 - 372,225 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936659	324,996 - 385,646 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

locomotory behavior (ISO)

neurotransmitter receptor localization to postsynaptic specialization membrane (ISO)

positive regulation of smooth muscle cell differentiation (IEA)

protein secretion (IEA,ISO)

regulation of vascular associated smooth muscle cell dedifferentiation (ISO)

signal transduction (IEA)

visual perception (ISO)

Cellular Component

AMPA glutamate receptor complex (ISO)

cytoplasm (IEA)

extracellular region (IEA)

extracellular space (IEA)

extrinsic component of postsynaptic density membrane (ISO)

glutamatergic synapse (ISO)

nucleoplasm (IEA)

nucleus (IEA)

synapse (IEA)

synaptic membrane (ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Olfm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	209,969,055 - 210,029,710 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936659	325,436 - 372,225 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936659	324,996 - 385,646 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

OLFM2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	9,853,718 - 9,936,515 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	9,853,718 - 9,936,515 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	9,964,394 - 10,047,191 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	9,825,394 - 9,908,070 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	9,825,394 - 9,908,070	NCBI
Celera	19	9,859,823 - 9,942,535 (-)	NCBI		Celera
Cytogenetic Map	19	p13.2	NCBI
HuRef	19	9,545,037 - 9,627,331 (-)	NCBI		HuRef
CHM1_1	19	9,964,109 - 10,046,786 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	9,979,884 - 10,062,687 (-)	NCBI		T2T-CHM13v2.0

Olfm2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	20,578,986 - 20,657,660 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	20,578,986 - 20,657,645 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	20,667,690 - 20,746,333 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	20,667,690 - 20,746,349 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	20,472,430 - 20,532,658 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	20,418,102 - 20,478,631 (-)	NCBI		MGSCv36	mm8
Celera	9	17,938,428 - 17,996,310 (-)	NCBI		Celera
Cytogenetic Map	9	A3	NCBI
cM Map	9	7.6	NCBI

Olfm2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	27,480,703 - 27,558,416 (-)	NCBI		GRCr8
mRatBN7.2	8	19,204,472 - 19,282,154 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	19,204,475 - 19,282,117 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	23,224,798 - 23,283,196 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	21,522,638 - 21,581,036 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	19,434,221 - 19,493,166 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	21,684,307 - 21,762,000 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	21,681,266 - 21,743,338 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	21,740,363 - 21,818,045 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	19,685,433 - 19,746,974 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	19,685,433 - 19,746,974 (-)	NCBI
Celera	8	20,599,780 - 20,658,825 (-)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

Olfm2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	1,264,831 - 1,328,877 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955495	1,264,831 - 1,328,877 (-)	NCBI	ChiLan1.0	ChiLan1.0

OLFM2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	14,772,348 - 14,855,375 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	13,774,905 - 13,855,608 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	9,408,161 - 9,488,855 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	10,071,375 - 10,151,178 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	10,071,375 - 10,151,183 (-)	Ensembl	panpan1.1		panPan2

OLFM2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	51,148,013 - 51,153,303 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	51,148,157 - 51,153,314 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	50,955,590 - 51,016,889 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	51,613,108 - 51,674,476 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	51,612,962 - 51,674,473 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	50,820,875 - 50,882,225 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	51,245,805 - 51,307,078 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	51,486,759 - 51,548,349 (+)	NCBI		UU_Cfam_GSD_1.0

OLFM2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	68,734,081 - 68,807,191 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	68,734,078 - 68,807,207 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	69,063,856 - 69,135,514 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OLFM2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	8,939,966 - 8,947,913 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	8,939,603 - 8,947,678 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666074	11,068,366 - 11,161,713 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Olfm2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	2,135,245 - 2,200,332 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624828	2,134,728 - 2,200,354 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013363273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040290501	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000005302 ⟹ ENSSTOP00000004752

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936659	325,436 - 330,221 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000030283 ⟹ ENSSTOP00000031215

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936659	325,436 - 372,225 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000037982 ⟹ ENSSTOP00000027499

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936659	325,436 - 330,783 (-)	Ensembl

RefSeq Acc Id:

XM_013363273 ⟹ XP_013218727

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	209,969,055 - 210,029,710 (+)	NCBI
SpeTri2.0	NW_004936659	324,996 - 385,646 (-)	NCBI

Sequence:

show sequence

GCTGCCGCTGCTGCTGCTGCCGCTGCTGTGCTCAGGCCTCGCCGGACAGACTCTCTTCCAGAGT
CCAGAAGAGGGCTGGCAACTGTACACCTCGGCCCAGGCCCCTGACGGCAAATGCATCTGCACAG
CGGTGATCCCGGCTCAGAGCACCTGCTCCCGCGATGGTCGCAGCCGGGAGCTGCGGCAGCTGAT
GGAGAAGGTCCAGAATGTGTCGCAGTCCATGGAGGTCCTTGAGTTACGGACGTTCCGCGACCTG
CAGTACGTCCGCAGCATGGAGACCCTCATGCGCAGCCTGGACGCGAGGCTCCGGGCAGCCGATG
GGTCCGTCTCGGCCAAGAGCTTCCAGGAGCTGAAGGACAGGATGACAGAGCTACTGCCCCTGAG
CTCGGTCCTGGAGCAGTACAAAGCGGACACGCGGACCATCGTGCGCCTGCGCGAGGAGGTGCGC
AATCTCTCGGGCAGCTTGGCGGCCATCCAGGAGGAGATGGGCGCCTACGGGTACGAGGACCTTC
AGCAGCGCGTGATGGCTCTGGAGGCCCGGCTCCATGCCTGCGCCCAGAAACTGGGCTGCGGGAA
GTTGACTGGTGTCAGTAACCCCATCACTGTCCGGGCTATGGGGTCCCGCTTTGGCTCGTGGATG
ACTGACACGATGGCTCCCAGTGCCGATAGCCGGGTCTGGTACATGGACGGCTATTACAAGGGCC
GGCGGGTGCTGGAGTTCCGCACTCTGGGCGATTTCATCAAAGGCCAGAACTTTATCCAGCACCT
GCTGCCCCAGCCATGGGCGGGCACGGGCCACGTGGTGTACAATGGCTCCCTGTTCTATAACAAG
TACCAGAGCAACGTGGTGGTCAAGTACCACTTCCGCTCGCGCTCCGTGCTGGTGCAGAGGAGTC
TCCCTGGGGCTGGCTACAACAACACCTTCCCCTACTCCTGGGGTGGCTTCTCCGACATGGACTT
CATGGTGGACGAGAGCGGGCTCTGGGCCGTGTATACCACCAACCAGAACGCGGGCAACATTGTG
GTCAGCCGGCTGGACCCGCACACCCTGGAGGTCATGCGGTCCTGGGACACTGGCTACCCCAAGC
GCAGTGCTGGGGAGGCCTTCATGATCTGTGGCGTGCTCTATGTGACCAACTCCCACCTGGCCGG
GGCCAAGGTCTACTTCGCCTACTTCACCAACACGTCCAGTTATGAGTACACGGACGTCCCCTTC
CACAACCAGTACTCCCACATCTCCATGCTGGATTACAACCCCCGGGAGCGGGCCCTGTACACCT
GGAACAATGGCCACCAGGTGCTCTACAATGTCACTCTCTTCCATGTCATCAGCACCGCTGGGGA
TCCCTAGGTGCCTCCGCGGCTCAGGCTGCCCCACGTGGGCTGCTGGGGCCCTTCCCACTCTGCC
TGTGTCCCTTCAAGTTTCTGTCTCTGTGGTGCCCTCTCCCCACCTTTCTGCACACCCAGCTTTC
ATTCTCTGCCCTGAATTCCTATCAATGCCTCTTCTCCATTTTCTCTTCTCCTTTATTGATCTCT
GCTTTTGATACTCCACTTCTTGGTCTTTCTGCCTTTTATTGATGTCCCTCCGTCTCTTTCTTTT
CATTGATCTGACCCTCCAGTTCTCTTTCTGTCTCTCTTTCTCCCCCTCCCCTCCTGCTCTTTGC
CCCTCTCCTGCTCTTCATCCTCACTCCCAACCCCCAGCCCCTGGAGTTGAGTGCATGGATCTTT
TTTTTTTAATTTACACTTTTTTCTTTCTGGGTTGCTGGAATAAACGGGACCTTTGACATTTGA

hide sequence

RefSeq Acc Id:

XM_040290501 ⟹ XP_040146435

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	209,982,509 - 210,029,710 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_013218727	(Get FASTA)	NCBI Sequence Viewer
	XP_040146435	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000004752.3
	ENSSTOP00000027499.1
	ENSSTOP00000031215.1
GenBank Protein	KAG3280378	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013218727 ⟸ XM_013363273

- UniProtKB:

I3M5U5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEKVQNVSQSMEVLELRTFRDLQYVRSMETLMRSLDARLRAADGSVSAKSFQELKDRMTELLPL
SSVLEQYKADTRTIVRLREEVRNLSGSLAAIQEEMGAYGYEDLQQRVMALEARLHACAQKLGCG
KLTGVSNPITVRAMGSRFGSWMTDTMAPSADSRVWYMDGYYKGRRVLEFRTLGDFIKGQNFIQH
LLPQPWAGTGHVVYNGSLFYNKYQSNVVVKYHFRSRSVLVQRSLPGAGYNNTFPYSWGGFSDMD
FMVDESGLWAVYTTNQNAGNIVVSRLDPHTLEVMRSWDTGYPKRSAGEAFMICGVLYVTNSHLA
GAKVYFAYFTNTSSYEYTDVPFHNQYSHISMLDYNPRERALYTWNNGHQVLYNVTLFHVISTAG
DP

hide sequence

RefSeq Acc Id:	XP_040146435 ⟸ XM_040290501
- UniProtKB:	I3M5U5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSSTOP00000027499 ⟸ ENSSTOT00000037982

Ensembl Acc Id:

ENSSTOP00000004752 ⟸ ENSSTOT00000005302

Ensembl Acc Id:

ENSSTOP00000031215 ⟸ ENSSTOT00000030283

Protein Domains

Olfactomedin-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000005307	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000005302.3	UniProtKB/TrEMBL
	ENSSTOT00000030283.1	UniProtKB/TrEMBL
	ENSSTOT00000037982.1	UniProtKB/TrEMBL
InterPro	Noelin_dom	UniProtKB/TrEMBL
	Olfac-like_dom	UniProtKB/TrEMBL
	Olfactomedin-like_domain	UniProtKB/TrEMBL
NCBI Gene	Olfm2	ENTREZGENE
PANTHER	OLFACTOMEDIN-RELATED	UniProtKB/TrEMBL
	PTHR23192:SF27	UniProtKB/TrEMBL
Pfam	Noelin-1	UniProtKB/TrEMBL
	OLF	UniProtKB/TrEMBL
PROSITE	OLF	UniProtKB/TrEMBL
SMART	OLF	UniProtKB/TrEMBL
UniProt	A0A287D1T6_ICTTR	UniProtKB/TrEMBL
	A0A287DCB9_ICTTR	UniProtKB/TrEMBL
	I3M5U5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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