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Gene: Ccdc15 (coiled-coil domain containing 15) Ictidomys tridecemlineatus

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Symbol:

Ccdc15

Name:

coiled-coil domain containing 15

RGD ID:

12564869

Description:

INVOLVED IN cilium assembly (ortholog); positive regulation of centriole elongation (ortholog); ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); holoprosencephaly 11 (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

coiled-coil domain containing 15, transcript variant X1; coiled-coil domain containing 15, transcript variant X10; coiled-coil domain containing 15, transcript variant X11; coiled-coil domain containing 15, transcript variant X12; coiled-coil domain containing 15, transcript variant X13; coiled-coil domain containing 15, transcript variant X14; coiled-coil domain containing 15, transcript variant X2; coiled-coil domain containing 15, transcript variant X3; coiled-coil domain containing 15, transcript variant X4; coiled-coil domain containing 15, transcript variant X5; coiled-coil domain containing 15, transcript variant X6; coiled-coil domain containing 15, transcript variant X7; coiled-coil domain containing 15, transcript variant X8; coiled-coil domain containing 15, transcript variant X9; coiled-coil domain-containing protein 15; coiled-coil domain-containing protein 15-like; LOC101956716; LOC106145339

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	107,140,521 - 107,214,867 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936743	1,441,967 - 1,462,462 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 11 partial duplication syndrome (ISO)

Dwarfism (ISO)

holoprosencephaly 11 (ISO)

Jacobsen Syndrome (ISO)

Neurodevelopmental Disorders (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cilium assembly (ISO)

positive regulation of centriole elongation (ISO)

Cellular Component

centriole (ISO)

centrosome (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Ccdc15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	107,140,521 - 107,214,867 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936743	1,441,967 - 1,462,462 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC15
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	124,954,202 - 125,041,489 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	124,954,121 - 125,041,489 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	124,824,098 - 124,911,385 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	124,329,227 - 124,416,595 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	121,984,158 - 122,071,427 (+)	NCBI		Celera
Cytogenetic Map	11	q24.2	NCBI
HuRef	11	120,766,209 - 120,853,474 (+)	NCBI		HuRef
CHM1_1	11	124,710,126 - 124,797,386 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	124,982,721 - 125,070,161 (+)	NCBI		T2T-CHM13v2.0

Ccdc15
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	37,178,758 - 37,262,508 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	37,187,131 - 37,259,728 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	37,267,462 - 37,350,218 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	37,275,835 - 37,348,432 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	37,083,420 - 37,155,977 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	37,025,506 - 37,098,105 (-)	NCBI		MGSCv36	mm8
Celera	9	34,490,165 - 34,562,711 (-)	NCBI		Celera
Cytogenetic Map	9	A4	NCBI
cM Map	9	20.74	NCBI

Ccdc15
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	45,165,297 - 45,257,641 (-)	NCBI		GRCr8
mRatBN7.2	8	36,991,147 - 37,068,849 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	36,998,867 - 37,068,919 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	8	39,759,077 - 39,830,235 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	39,762,035 - 39,830,306 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	39,757,789 - 39,846,057 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	38,534,697 - 38,603,744 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	38,572,522 - 38,612,510 (-)	NCBI
Celera	8	37,382,910 - 37,453,937 (+)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

Ccdc15
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	26,005,090 - 26,089,615 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955412	26,014,842 - 26,089,556 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCDC15
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	125,650,094 - 125,750,743 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	126,754,989 - 126,850,884 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	119,781,702 - 119,872,629 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	123,696,106 - 123,783,190 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	123,696,718 - 123,782,549 (+)	Ensembl	panpan1.1		panPan2

CCDC15
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	9,425,436 - 9,505,370 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	9,425,997 - 9,504,919 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	9,467,551 - 9,550,498 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	9,361,883 - 9,444,671 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	9,364,705 - 9,444,598 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	9,434,680 - 9,517,431 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	9,405,174 - 9,487,965 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	9,441,819 - 9,524,807 (-)	NCBI		UU_Cfam_GSD_1.0

CCDC15
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	52,147,082 - 52,217,674 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	52,146,298 - 52,217,679 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	57,654,393 - 57,731,500 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC15
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	116,086,222 - 116,203,398 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666043	9,917,198 - 10,020,384 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc15
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624927	962,958 - 1,084,156 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624927	963,083 - 1,105,668 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021719550	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021719563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285478	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285487	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285494	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005733825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_021719550 ⟹ XP_021575225

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,140,522 - 107,181,807 (+)	NCBI

Sequence:

show sequence

ACAAGGCTGTGGAGCGGTGGGGAGGGGCGTCCGCCGAAAGTGGCGGTTTACTTGAGGTGGTTTC
CTTAGTGTCCAGTATAGTTTGACTCTCCGGCCGAGCTCAGGACTCGTACTGCACCAGTGCTATC
TGGGCTGGAGTGGGCTCCCGCGTCCTCTGAAGCAGGCTTTTATCTGTCCCAGAACTTGCGGGTT
CAGCGTTTCTCTCCATATCCGGATACCGATTACGAAGTCACAGATGCAAGGACGTATGGCTCCC
CTCAAGAAATCTCAAAATTCCACAAAGTTACCCCTGGCTTTAAACCCCACGAAGAGCAAGGACG
TGTTAGCAGTGCTGGCTGAGAGGAATCAAGCTGTAATCCCAGTTGGGGTATGGGTGGAACCTGC
CTCCCCAAATAGTTTGGAAATCCCAGCATCTACTTCAGCACATATGATTGAAGAAGAACTAAAG
GAACAACTACGAAAAAAACAAGAAGCTTTGAGACATTTTCAGAGACAAGTCAAACACCGAGTCA
ATCAACAAATTAGACTGAAAAAACAGCAACAGCTTCAGAAGTCTTTTGAAGCAGCAGAAAAAGA
AGGTTCTATAGCCATGCAATCTTCAGATCCAGCACACTTCACTCCTAAAGGGACAAGTATTTTT
CCAAGCAATTTGAATTCTGCAATTGGAAGTTCTGGGTTACCTGCTTCCCAGATGTTTGGGAGTG
CAATAAAAGATGGAGAGAATCAGAATGAATTATTCCAACAACAAGCCCAAGCTCTTAGTCAAAC
CATGAAACAAGTACGTCACCGGCTGGCATCCCATAAAACTGTGAGTAAAAAAAAGTCATCAGTG
TTTCCAGATGGTATGAGGAAAAGCTTTTCTATCCAACAGGAATCTGACAGTGAGGAAGTATTAT
CTATTATAACAAATGAGAAAGGGAGAGACGATTTATTTTGGGGAGACAAGCAGAGTCTCTTTTC
TGAAGACAATGATAAGCCTTTTAGCAGAGTTCAGAAAGTAAAATTCAAAAATCCATTATTTGTT
GTCATAGAAGAGAAAGAACAAAAGCAGTCACATTTTCAGGGTCTTGAAGCCCAGGATTATCCTC
TGGAAACCAAAGGTGATTTGATAGAAGTTCAGAGTATTGAGCCTGAAAAGAGTATTGAGCCAGA
TGTCCAGGCTGTTGATCTGGAAGTTCAAGCTATTGAGCCAGAATGCCAAGCCATTGAATCAGAA
GTCCAGGCTTTTAAGACAGAAACTTGGAGTATTATGATAAAAGCCAGTAGCACTGAGATAGAAA
ATAGGAATATTGAGTTAAAAGCACAGGATTTTCTACCCAAAAACCAGGCCTTTCTGCCCAAATG
TGAGGACCAAGATTCTCTACCCCAAAACCCCTATGTTCTCCCTAAAGACCAGAATATTCTACCC
AAATATCAGGACCAGAATTTTCTGCATAAAAACCAGGATTTTCTACCCAGAGACCAGGATATTC
TACCCAAATGTCAGGACCAAGACTTTCTACCTGATAAAGACCAGGATTTTCTATCTAGAAACCA
GCATGTGTTCCCTGAAGACCAGAATATTCTACACAAATATCAGGACCAAGATTTTCTACATGAT
GACCAGGATTTTCTATGTAGAGACCAGTGTGTTCTTCCCAAAGACCAGAATATTCTTCTCAAAT
GCCAGGACCAGGATTTTCTCCCTAAAGATCAGTACATTCTCCTCTCAGATGAGAATCTTCTATA
CAAATGTCAGAAGCAGGATATTCCACTCAAAGATCAGGAAAAATATATCTGGCAGCCATCATTG
GCTTTGACAGTTGAAAGATGGAAAAAGGAGTGGCCTACAAGAACAGAAACATATCTTTCACATA
GGTTCCAAGGCCAGCCCTCTACTGGGGATCAGTCAGAGAAAAAGGAGGAAGAGGATCAACAGGA
AAAAGTTCATTTTCTGGAGCCATTTTCTGATGAGGAAGGGAGAGAAGACTTTTCTCTGGTGGGT
TATCAGTGTCTGCCTCCCCAAACCCAATTCCAGGGCTTCATCAGAGAGCAGCACAGTAACTATG
GGCAAGCATCACATGATATGACAGATGAGAAATGGAGAAGAGAGTTGCTTCCAGAGTACCACAG
ATATGGTTTACATAAAATCCAGGATCCTGGCTCTGCCAGAGATCAGAGCTTAAACTTTAGGCAG
CAGCCATCTGTTGGAACAGCTGAAAGATGCCAAGAAGACTTGCTTCTGAATCACCATCAGCATC
TTGCACCCAAGCATCAGAGAGACACTTGCAGGAGACGACAGGTTTATAATGATTATCAGTCAGG
ACTAAGCAATGAATTCCAAACTCCATTGGCATTTCAGTCTGGAGTAGATAAAGAGGAAGACAAG
AAAGAGCGTCAAAAGCAGTACCTGAGACACAGAAGACTTTTCATGGATATTGAAAGAGAACAAG
TAAAAGAACAAAAAAGACAAAAGGAACAAAAGAAGAAAATTGAAAAGTATTCACATCAGAGATG
CAGTCTGCTCTCAGGAAGACCTATGTGAGGAACAGGACTATCTAGGCCTTGAGAATGGAAAGTT
GAAATACAGAACTCCAGGGGCCTCAGTACCTGGAGCAGAGTCTAGAAGAGCAGGCATAGGCTTC
AGCCTTTGTAGGATGTCTTCCAGATTTTTAATTTATACCTTGTTAATCTAACAAAATGGAAGAC
TGATTACCCTGGAGTTCATGGCCTGCCACAAAT

hide sequence

RefSeq Acc Id:

XM_040285474 ⟹ XP_040141408

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,140,525 - 107,214,867 (+)	NCBI

RefSeq Acc Id:

XM_040285475 ⟹ XP_040141409

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,140,524 - 107,214,867 (+)	NCBI

RefSeq Acc Id:

XM_040285476 ⟹ XP_040141410

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,140,525 - 107,214,867 (+)	NCBI

RefSeq Acc Id:

XM_040285477 ⟹ XP_040141411

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,140,523 - 107,214,867 (+)	NCBI

RefSeq Acc Id:

XM_040285478 ⟹ XP_040141412

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,140,525 - 107,214,867 (+)	NCBI

RefSeq Acc Id:

XM_040285479 ⟹ XP_040141413

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,140,525 - 107,214,867 (+)	NCBI

RefSeq Acc Id:

XM_040285480 ⟹ XP_040141414

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,140,525 - 107,214,867 (+)	NCBI

RefSeq Acc Id:

XM_040285481 ⟹ XP_040141415

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,140,524 - 107,214,867 (+)	NCBI

RefSeq Acc Id:

XM_040285482 ⟹ XP_040141416

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,140,525 - 107,214,867 (+)	NCBI

RefSeq Acc Id:

XM_040285484 ⟹ XP_040141418

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,140,525 - 107,214,867 (+)	NCBI

RefSeq Acc Id:

XM_040285485 ⟹ XP_040141419

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,141,128 - 107,214,867 (+)	NCBI

RefSeq Acc Id:

XM_040285486 ⟹ XP_040141420

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,140,525 - 107,214,867 (+)	NCBI

RefSeq Acc Id:

XM_040285487 ⟹ XP_040141421

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,140,525 - 107,214,867 (+)	NCBI

RefSeq Acc Id:

XM_040285488 ⟹ XP_040141422

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,140,525 - 107,214,867 (+)	NCBI

RefSeq Acc Id:

XM_040285489 ⟹ XP_040141423

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,140,525 - 107,214,867 (+)	NCBI

RefSeq Acc Id:

XM_040285490 ⟹ XP_040141424

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,140,524 - 107,214,867 (+)	NCBI

RefSeq Acc Id:

XM_040285491 ⟹ XP_040141425

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,140,525 - 107,214,867 (+)	NCBI

RefSeq Acc Id:

XM_040285492 ⟹ XP_040141426

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,140,526 - 107,214,867 (+)	NCBI

RefSeq Acc Id:

XM_040285494 ⟹ XP_040141428

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,140,521 - 107,176,399 (+)	NCBI

RefSeq Acc Id:

XM_040285495 ⟹ XP_040141429

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,140,525 - 107,214,867 (+)	NCBI

RefSeq Acc Id:

XM_040285496 ⟹ XP_040141430

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,140,526 - 107,214,867 (+)	NCBI

RefSeq Acc Id:

XM_040285497 ⟹ XP_040141431

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,140,527 - 107,214,867 (+)	NCBI

RefSeq Acc Id:

XR_005733825

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	107,140,522 - 107,212,372 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_021575225	(Get FASTA)	NCBI Sequence Viewer
	XP_040141408	(Get FASTA)	NCBI Sequence Viewer
	XP_040141409	(Get FASTA)	NCBI Sequence Viewer
	XP_040141410	(Get FASTA)	NCBI Sequence Viewer
	XP_040141411	(Get FASTA)	NCBI Sequence Viewer
	XP_040141412	(Get FASTA)	NCBI Sequence Viewer
	XP_040141413	(Get FASTA)	NCBI Sequence Viewer
	XP_040141414	(Get FASTA)	NCBI Sequence Viewer
	XP_040141415	(Get FASTA)	NCBI Sequence Viewer
	XP_040141416	(Get FASTA)	NCBI Sequence Viewer
	XP_040141418	(Get FASTA)	NCBI Sequence Viewer
	XP_040141419	(Get FASTA)	NCBI Sequence Viewer
	XP_040141420	(Get FASTA)	NCBI Sequence Viewer
	XP_040141421	(Get FASTA)	NCBI Sequence Viewer
	XP_040141422	(Get FASTA)	NCBI Sequence Viewer
	XP_040141423	(Get FASTA)	NCBI Sequence Viewer
	XP_040141424	(Get FASTA)	NCBI Sequence Viewer
	XP_040141425	(Get FASTA)	NCBI Sequence Viewer
	XP_040141426	(Get FASTA)	NCBI Sequence Viewer
	XP_040141428	(Get FASTA)	NCBI Sequence Viewer
	XP_040141429	(Get FASTA)	NCBI Sequence Viewer
	XP_040141430	(Get FASTA)	NCBI Sequence Viewer
	XP_040141431	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	KAG3286873	(Get FASTA)	NCBI Sequence Viewer
	KAG3286874	(Get FASTA)	NCBI Sequence Viewer
	KAG3286875	(Get FASTA)	NCBI Sequence Viewer
	KAG3286876	(Get FASTA)	NCBI Sequence Viewer
	KAG3286877	(Get FASTA)	NCBI Sequence Viewer
	KAG3286878	(Get FASTA)	NCBI Sequence Viewer
	KAG3286879	(Get FASTA)	NCBI Sequence Viewer
	KAG3286880	(Get FASTA)	NCBI Sequence Viewer
	KAG3286881	(Get FASTA)	NCBI Sequence Viewer
	KAG3286882	(Get FASTA)	NCBI Sequence Viewer
	KAG3286883	(Get FASTA)	NCBI Sequence Viewer
	KAG3286884	(Get FASTA)	NCBI Sequence Viewer
	KAG3286885	(Get FASTA)	NCBI Sequence Viewer
	KAG3286886	(Get FASTA)	NCBI Sequence Viewer
	KAG3286887	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_040141428 ⟸ XM_040285494
- Peptide Label:	isoform X19

RefSeq Acc Id:

XP_021575225 ⟸ XM_021719550

- Peptide Label:

isoform X18

- Sequence:

show sequence

MQGRMAPLKKSQNSTKLPLALNPTKSKDVLAVLAERNQAVIPVGVWVEPASPNSLEIPASTSAH
MIEEELKEQLRKKQEALRHFQRQVKHRVNQQIRLKKQQQLQKSFEAAEKEGSIAMQSSDPAHFT
PKGTSIFPSNLNSAIGSSGLPASQMFGSAIKDGENQNELFQQQAQALSQTMKQVRHRLASHKTV
SKKKSSVFPDGMRKSFSIQQESDSEEVLSIITNEKGRDDLFWGDKQSLFSEDNDKPFSRVQKVK
FKNPLFVVIEEKEQKQSHFQGLEAQDYPLETKGDLIEVQSIEPEKSIEPDVQAVDLEVQAIEPE
CQAIESEVQAFKTETWSIMIKASSTEIENRNIELKAQDFLPKNQAFLPKCEDQDSLPQNPYVLP
KDQNILPKYQDQNFLHKNQDFLPRDQDILPKCQDQDFLPDKDQDFLSRNQHVFPEDQNILHKYQ
DQDFLHDDQDFLCRDQCVLPKDQNILLKCQDQDFLPKDQYILLSDENLLYKCQKQDIPLKDQEK
YIWQPSLALTVERWKKEWPTRTETYLSHRFQGQPSTGDQSEKKEEEDQQEKVHFLEPFSDEEGR
EDFSLVGYQCLPPQTQFQGFIREQHSNYGQASHDMTDEKWRRELLPEYHRYGLHKIQDPGSARD
QSLNFRQQPSVGTAERCQEDLLLNHHQHLAPKHQRDTCRRRQVYNDYQSGLSNEFQTPLAFQSG
VDKEEDKKERQKQYLRHRRLFMDIEREQVKEQKRQKEQKKKIEKYSHQRCSLLSGRPM

hide sequence

RefSeq Acc Id:	XP_040141411 ⟸ XM_040285477
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_040141409 ⟸ XM_040285475
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_040141424 ⟸ XM_040285490
- Peptide Label:	isoform X15

RefSeq Acc Id:	XP_040141415 ⟸ XM_040285481
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_040141408 ⟸ XM_040285474
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_040141413 ⟸ XM_040285479
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_040141410 ⟸ XM_040285476
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040141418 ⟸ XM_040285484
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_040141412 ⟸ XM_040285478
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_040141421 ⟸ XM_040285487
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_040141416 ⟸ XM_040285482
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_040141423 ⟸ XM_040285489
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_040141420 ⟸ XM_040285486
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_040141425 ⟸ XM_040285491
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_040141422 ⟸ XM_040285488
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_040141429 ⟸ XM_040285495
- Peptide Label:	isoform X20

RefSeq Acc Id:	XP_040141414 ⟸ XM_040285480
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_040141426 ⟸ XM_040285492
- Peptide Label:	isoform X17

RefSeq Acc Id:	XP_040141430 ⟸ XM_040285496
- Peptide Label:	isoform X21

RefSeq Acc Id:	XP_040141431 ⟸ XM_040285497
- Peptide Label:	isoform X22

RefSeq Acc Id:	XP_040141419 ⟸ XM_040285485
- Peptide Label:	isoform X10

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	LOC106145339	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-26	Ccdc15	coiled-coil domain containing 15	LOC106145339	coiled-coil domain-containing protein 15-like	Symbol and/or name change	5135510	APPROVED
2021-03-25	LOC106145339	coiled-coil domain-containing protein 15-like	Ccdc15	coiled-coil domain containing 15	Data merged from RGD:12658453	737654	PROVISIONAL
2017-07-13	Ccdc15	coiled-coil domain containing 15	LOC101956716	coiled-coil domain-containing protein 15	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar