LOC101978685 (N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase) - Rat Genome Database

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Gene: LOC101978685 (N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101978685 (Ensembl: GCNT2)
Name: N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase
RGD ID: 12564841
Description: ENCODES a protein that exhibits acetylglucosaminyltransferase activity (inferred); glycosyltransferase activity (inferred); N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity (inferred); INVOLVED IN positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH cataract (ortholog); cataract 13 with adult i phenotype (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Gcnt2; glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group); N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase, transcript variant X1; N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase, transcript variant X2; N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase, transcript variant X3; N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase, transcript variant X4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494614,040,501 - 14,097,520 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365342,309,480 - 2,388,249 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365342,311,217 - 2,366,327 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101978685
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494614,040,501 - 14,097,520 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365342,309,480 - 2,388,249 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365342,311,217 - 2,366,327 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GCNT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38610,521,351 - 10,629,368 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl610,492,223 - 10,629,368 (+)EnsemblGRCh38hg38GRCh38
GRCh37610,521,584 - 10,629,601 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36610,636,697 - 10,737,587 (+)NCBINCBI36Build 36hg18NCBI36
Celera611,750,073 - 11,858,098 (+)NCBICelera
Cytogenetic Map6p24.3-p24.2NCBI
HuRef610,397,294 - 10,505,347 (+)NCBIHuRef
CHM1_1610,523,710 - 10,631,709 (+)NCBICHM1_1
T2T-CHM13v2.0610,389,059 - 10,497,066 (+)NCBIT2T-CHM13v2.0
Gcnt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391341,013,417 - 41,114,368 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1341,013,230 - 41,114,368 (+)EnsemblGRCm39 Ensembl
GRCm381340,859,768 - 40,960,892 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1340,859,754 - 40,960,892 (+)EnsemblGRCm38mm10GRCm38
MGSCv371340,955,501 - 41,056,261 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361340,871,106 - 40,971,866 (+)NCBIMGSCv36mm8
Celera1341,943,688 - 42,044,977 (+)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1320.12NCBI
Gcnt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81724,002,592 - 24,107,339 (-)NCBIGRCr8
mRatBN7.21723,796,859 - 23,901,625 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1723,796,859 - 23,901,611 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1723,666,867 - 23,737,375 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01725,270,336 - 25,340,857 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01723,607,833 - 23,678,356 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01721,634,546 - 21,677,477 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1721,634,551 - 21,739,408 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01723,615,668 - 23,657,985 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01723,685,139 - 23,686,828 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41729,767,383 - 29,808,950 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11729,770,228 - 29,811,631 (-)NCBI
Celera1723,466,366 - 23,508,072 (-)NCBICelera
Cytogenetic Map17p12NCBI
GCNT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2525,173,692 - 25,279,093 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1621,163,078 - 21,268,776 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0610,357,919 - 10,470,512 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1610,638,833 - 10,750,975 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl610,626,891 - 10,750,975 (+)Ensemblpanpan1.1panPan2
GCNT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13510,304,741 - 10,387,746 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3510,305,350 - 10,385,672 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3510,253,572 - 10,336,564 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03510,408,935 - 10,491,996 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3510,409,093 - 10,491,994 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13510,263,504 - 10,321,630 (+)NCBIUMICH_Zoey_3.1
UMICH_Zoey_3.13510,238,491 - 10,252,850 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03510,279,205 - 10,368,498 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03511,605,949 - 11,688,956 (+)NCBIUU_Cfam_GSD_1.0
LOC100152566
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl77,328,214 - 7,422,197 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.177,382,731 - 7,422,199 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.277,640,231 - 7,731,681 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GCNT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11761,533,622 - 61,607,702 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1761,533,314 - 61,642,659 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604410,540,562 - 10,642,529 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gcnt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475615,257,623 - 15,313,668 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475615,231,222 - 15,342,469 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000023363   ⟹   ENSSTOP00000021524
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365342,309,480 - 2,344,676 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000034516   ⟹   ENSSTOP00000026279
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365342,309,480 - 2,366,706 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000040914   ⟹   ENSSTOP00000029524
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365342,309,480 - 2,388,249 (-)Ensembl
RefSeq Acc Id: XM_005327476   ⟹   XP_005327533
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494614,040,501 - 14,075,613 (-)NCBI
SpeTri2.0NW_0049365342,311,217 - 2,344,736 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005327477   ⟹   XP_005327534
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494614,040,501 - 14,097,520 (-)NCBI
SpeTri2.0NW_0049365342,311,217 - 2,366,307 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005327534   ⟸   XM_005327477
- Peptide Label: isoform X1
- UniProtKB: A0A287CYE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005327533   ⟸   XM_005327476
- Peptide Label: isoform X2
- UniProtKB: I3NAX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000026279   ⟸   ENSSTOT00000034516
RefSeq Acc Id: ENSSTOP00000021524   ⟸   ENSSTOT00000023363
RefSeq Acc Id: ENSSTOP00000029524   ⟸   ENSSTOT00000040914


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025970 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000023363.2 UniProtKB/TrEMBL
  ENSSTOT00000034516.1 UniProtKB/TrEMBL
  ENSSTOT00000040914.1 UniProtKB/TrEMBL
InterPro Glyco_trans_14 UniProtKB/TrEMBL
NCBI Gene Gcnt2 ENTREZGENE
PANTHER GLYCOSYLTRANSFERASE 14 FAMILY MEMBER UniProtKB/TrEMBL
  N-ACETYLLACTOSAMINIDE BETA-1,6-N-ACETYLGLUCOSAMINYL-TRANSFERASE UniProtKB/TrEMBL
  N-ACETYLLACTOSAMINIDE BETA-1,6-N-ACETYLGLUCOSAMINYL-TRANSFERASE UniProtKB/TrEMBL
Pfam Branch UniProtKB/TrEMBL
UniProt A0A287CYE5 ENTREZGENE, UniProtKB/TrEMBL
  A0A287D7L2_ICTTR UniProtKB/TrEMBL
  I3NAX7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-13 LOC101978685  N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase  Gcnt2  glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)  Symbol and/or name change 5135510 APPROVED