Tsc22d3 (TSC22 domain family member 3) - Rat Genome Database

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Gene: Tsc22d3 (TSC22 domain family member 3) Ictidomys tridecemlineatus
Analyze
Symbol: Tsc22d3
Name: TSC22 domain family member 3
RGD ID: 12564204
Description: ENCODES a protein that exhibits MRF binding (ortholog); INVOLVED IN body fluid secretion (ortholog); negative regulation of activation-induced cell death of T cells (ortholog); negative regulation of skeletal muscle tissue development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); COVID-19 (ortholog); hyperinsulinism (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: TSC22 domain family protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X80,613,791 - 80,680,477 (-)NCBI
SpeTri2.0NW_0049364996,977,924 - 7,044,173 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
Tsc22d3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X80,613,791 - 80,680,477 (-)NCBI
SpeTri2.0NW_0049364996,977,924 - 7,044,173 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSC22D3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX107,713,221 - 107,777,342 (-)EnsemblGRCh38hg38GRCh38
GRCh38X107,713,221 - 107,777,329 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X106,956,451 - 107,019,218 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X106,843,107 - 106,905,673 (-)NCBINCBI36hg18NCBI36
CeleraX107,427,403 - 107,489,966 (-)NCBI
Cytogenetic MapXq22.3NCBI
HuRefX96,580,831 - 96,643,067 (-)NCBIHuRef
CHM1_1X106,867,386 - 106,929,923 (-)NCBICHM1_1
Tsc22d3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X139,440,277 - 139,501,271 (-)NCBIGRCm39mm39
GRCm39 EnsemblX139,440,277 - 139,501,408 (-)Ensembl
GRCm38X140,539,528 - 140,600,522 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX140,539,528 - 140,600,659 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X137,074,067 - 137,135,061 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X135,885,892 - 135,889,531 (-)NCBImm8
CeleraX123,798,019 - 123,859,465 (-)NCBICelera
Cytogenetic MapXF1NCBI
Tsc22d3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X104,217,898 - 104,277,935 (-)NCBImRatBN7.2
mRatBN7.2 EnsemblX104,217,925 - 104,276,861 (-)Ensembl
Rnor_6.0X111,884,285 - 111,944,693 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX111,884,295 - 111,887,906 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0352,655,031 - 52,715,433 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X128,336,408 - 128,340,027 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X128,409,842 - 128,413,460 (-)NCBI
Celera343,710,349 - 43,713,973 (+)NCBICelera
Cytogenetic MapXq32NCBI
Tsc22d3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554908,177,356 - 8,238,373 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554908,177,356 - 8,238,373 (+)NCBIChiLan1.0ChiLan1.0
TSC22D3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X107,179,077 - 107,242,902 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX107,179,077 - 107,242,902 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X96,806,179 - 96,870,020 (-)NCBIMhudiblu_PPA_v0panPan3
TSC22D3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X81,235,489 - 81,298,290 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX81,235,809 - 81,298,192 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX67,355,142 - 67,417,939 (-)NCBI
ROS_Cfam_1.0X82,882,231 - 82,945,043 (-)NCBI
UMICH_Zoey_3.1X80,342,439 - 80,405,260 (-)NCBI
UNSW_CanFamBas_1.0X82,054,298 - 82,117,113 (-)NCBI
UU_Cfam_GSD_1.0X81,846,235 - 81,908,809 (-)NCBI
TSC22D3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX88,171,329 - 88,233,964 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X88,171,325 - 88,233,583 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X102,611,634 - 102,673,219 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TSC22D3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X95,535,798 - 95,606,309 (-)NCBI
Vero_WHO_p1.0NW_02366606520,659,327 - 20,723,753 (-)NCBI
Tsc22d3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248038,701,348 - 8,762,194 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005323376   ⟹   XP_005323433
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X80,613,791 - 80,617,490 (-)NCBI
SpeTri2.0NW_0049364997,040,481 - 7,044,173 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005323377   ⟹   XP_005323434
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X80,613,791 - 80,616,954 (-)NCBI
SpeTri2.0NW_0049364997,041,012 - 7,044,173 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021725212   ⟹   XP_021580887
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X80,613,791 - 80,680,242 (-)NCBI
SpeTri2.0NW_0049364996,977,924 - 7,044,173 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040284025   ⟹   XP_040139959
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X80,613,791 - 80,680,477 (-)NCBI
RefSeq Acc Id: XM_040284029   ⟹   XP_040139963
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X80,613,791 - 80,680,237 (-)NCBI
RefSeq Acc Id: XM_040284032   ⟹   XP_040139966
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X80,613,791 - 80,680,237 (-)NCBI
RefSeq Acc Id: XM_040284040   ⟹   XP_040139974
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X80,613,791 - 80,624,302 (-)NCBI
RefSeq Acc Id: XM_040284047   ⟹   XP_040139981
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X80,613,791 - 80,624,053 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005323433   ⟸   XM_005323376
- Peptide Label: isoform X2
- UniProtKB: I3N4Q2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005323434   ⟸   XM_005323377
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_021580887   ⟸   XM_021725212
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040139959   ⟸   XM_040284025
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040139966   ⟸   XM_040284032
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040139963   ⟸   XM_040284029
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040139974   ⟸   XM_040284040
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040139981   ⟸   XM_040284047
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000023521 ENTREZGENE
Ensembl Protein ENSSTOP00000019348 ENTREZGENE
  ENSSTOP00000024811 ENTREZGENE
NCBI Gene Tsc22d3 ENTREZGENE
UniProt I3N4Q2 ENTREZGENE