Sfxn1 (sideroflexin 1) - Rat Genome Database

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Gene: Sfxn1 (sideroflexin 1) Ictidomys tridecemlineatus
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Symbol: Sfxn1
Name: sideroflexin 1
RGD ID: 12562987
Description: ENCODES a protein that exhibits D-serine transmembrane transporter activity (ortholog); L-serine transmembrane transporter activity (ortholog); INVOLVED IN D-serine transport (ortholog); erythrocyte differentiation (ortholog); iron ion transport (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); Colorectal Neoplasms (ortholog); lung adenocarcinoma (ortholog); FOUND IN integral component of mitochondrial inner membrane (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: sideroflexin 1, transcript variant X1; sideroflexin 1, transcript variant X2; sideroflexin 1, transcript variant X3; sideroflexin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721392,004,958 - 92,032,126 (-)NCBI
SpeTri2.0NW_004936609727,621 - 754,806 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Sfxn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721392,004,958 - 92,032,126 (-)NCBI
SpeTri2.0NW_004936609727,621 - 754,806 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SFXN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5175,477,062 - 175,529,742 (+)EnsemblGRCh38hg38GRCh38
GRCh385175,478,560 - 175,529,742 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh375174,905,563 - 174,956,745 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365174,838,189 - 174,888,218 (+)NCBINCBI36hg18NCBI36
Build 345174,838,188 - 174,888,218NCBI
Celera5170,944,525 - 170,994,642 (+)NCBI
Cytogenetic Map5q35.2NCBI
HuRef5170,004,689 - 170,054,733 (+)NCBIHuRef
CHM1_15174,337,958 - 174,388,345 (+)NCBICHM1_1
Sfxn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391354,225,675 - 54,262,365 (+)NCBIGRCm39mm39
GRCm39 Ensembl1354,225,888 - 54,262,361 (+)Ensembl
GRCm381354,071,656 - 54,108,346 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1354,071,869 - 54,108,342 (+)EnsemblGRCm38mm10GRCm38
MGSCv371354,167,214 - 54,203,715 (+)NCBIGRCm37mm9NCBIm37
MGSCv361354,081,490 - 54,117,966 (+)NCBImm8
Celera1355,144,580 - 55,182,917 (+)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1328.4NCBI
Sfxn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21710,486,250 - 10,522,640 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1710,486,271 - 10,522,529 (-)Ensembl
Rnor_6.01711,046,588 - 11,082,219 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1711,045,761 - 11,082,047 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01713,157,817 - 13,193,253 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41716,601,066 - 16,636,502 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11716,601,065 - 16,636,502 (-)NCBI
Celera1710,555,805 - 10,591,237 (-)NCBICelera
Cytogenetic Map17p14NCBI
Sfxn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540828,054,211 - 28,106,175 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540828,054,211 - 28,105,294 (+)NCBIChiLan1.0ChiLan1.0
SFXN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15177,726,518 - 177,776,344 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5177,738,961 - 177,775,212 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05170,825,507 - 170,876,741 (+)NCBIMhudiblu_PPA_v0panPan3
SFXN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1437,485,360 - 37,517,743 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl437,487,438 - 37,512,289 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha437,431,872 - 37,472,432 (-)NCBI
ROS_Cfam_1.0437,851,035 - 37,891,568 (-)NCBI
UMICH_Zoey_3.1437,675,678 - 37,716,181 (-)NCBI
UNSW_CanFamBas_1.0437,863,646 - 37,904,164 (-)NCBI
UU_Cfam_GSD_1.0438,373,604 - 38,414,131 (-)NCBI
SFXN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl282,025,815 - 82,057,564 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1282,025,799 - 82,057,629 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2283,647,666 - 83,679,493 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SFXN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12377,625,740 - 77,675,935 (+)NCBI
ChlSab1.1 Ensembl2377,625,775 - 77,674,907 (+)Ensembl
Vero_WHO_p1.0NW_023666034912,795 - 964,512 (-)NCBI
Sfxn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473314,404,646 - 14,451,943 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005334102   ⟹   XP_005334159
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721392,004,958 - 92,032,125 (-)NCBI
SpeTri2.0NW_004936609727,621 - 754,806 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040273787   ⟹   XP_040129721
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721392,004,958 - 92,032,126 (-)NCBI
RefSeq Acc Id: XM_040273788   ⟹   XP_040129722
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721392,004,958 - 92,032,074 (-)NCBI
RefSeq Acc Id: XR_005728662
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721392,009,160 - 92,032,126 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005334159   ⟸   XM_005334102
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040129721   ⟸   XM_040273787
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040129722   ⟸   XM_040273788
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028251 ENTREZGENE
Ensembl Protein ENSSTOP00000022072 ENTREZGENE
NCBI Gene Sfxn1 ENTREZGENE