Sfxn1 (sideroflexin 1) - Rat Genome Database

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Gene: Sfxn1 (sideroflexin 1) Ictidomys tridecemlineatus
Analyze
Symbol: Sfxn1
Name: sideroflexin 1
RGD ID: 12562987
Description: ENCODES a protein that exhibits L-alanine transmembrane transporter activity (inferred); L-serine transmembrane transporter activity (inferred); monoatomic ion transmembrane transporter activity (inferred); INVOLVED IN erythrocyte differentiation (ortholog); iron ion transport (ortholog); one-carbon metabolic process (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); Colorectal Neoplasms (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred); mitochondrial inner membrane (inferred); mitochondrial membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sideroflexin 1, transcript variant X1; sideroflexin 1, transcript variant X2; sideroflexin 1, transcript variant X3; sideroflexin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721392,004,958 - 92,032,126 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936609729,589 - 754,774 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936609727,621 - 754,806 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Sfxn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721392,004,958 - 92,032,126 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936609729,589 - 754,774 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936609727,621 - 754,806 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SFXN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385175,478,560 - 175,529,742 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5175,477,062 - 175,529,742 (+)EnsemblGRCh38hg38GRCh38
GRCh375174,905,563 - 174,956,745 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365174,838,189 - 174,888,218 (+)NCBINCBI36Build 36hg18NCBI36
Build 345174,838,188 - 174,888,218NCBI
Celera5170,944,525 - 170,994,642 (+)NCBICelera
Cytogenetic Map5q35.2NCBI
HuRef5170,004,689 - 170,054,733 (+)NCBIHuRef
CHM1_15174,337,958 - 174,388,345 (+)NCBICHM1_1
T2T-CHM13v2.05176,022,352 - 176,073,526 (+)NCBIT2T-CHM13v2.0
Sfxn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391354,225,675 - 54,262,365 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1354,225,888 - 54,262,361 (+)EnsemblGRCm39 Ensembl
GRCm381354,071,656 - 54,108,346 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1354,071,869 - 54,108,342 (+)EnsemblGRCm38mm10GRCm38
MGSCv371354,167,214 - 54,203,715 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361354,081,490 - 54,117,966 (+)NCBIMGSCv36mm8
Celera1355,144,580 - 55,182,917 (+)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1328.4NCBI
Sfxn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81710,491,315 - 10,527,793 (-)NCBIGRCr8
mRatBN7.21710,486,250 - 10,522,640 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1710,486,271 - 10,522,529 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1710,500,879 - 10,536,327 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01712,035,078 - 12,070,519 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01710,497,317 - 10,532,759 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01711,046,588 - 11,082,219 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1711,045,761 - 11,082,047 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01713,157,817 - 13,193,253 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41716,601,066 - 16,636,502 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11716,601,065 - 16,636,502 (-)NCBI
Celera1710,555,805 - 10,591,237 (-)NCBICelera
Cytogenetic Map17p14NCBI
Sfxn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540828,054,211 - 28,106,175 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540828,054,211 - 28,105,294 (+)NCBIChiLan1.0ChiLan1.0
SFXN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24170,608,863 - 170,660,457 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15168,748,446 - 168,798,866 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05170,825,507 - 170,876,741 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15177,726,518 - 177,776,344 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5177,738,961 - 177,775,212 (+)Ensemblpanpan1.1panPan2
SFXN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1437,485,360 - 37,517,743 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl437,487,438 - 37,512,289 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha437,431,872 - 37,472,432 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0437,851,035 - 37,891,568 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl437,851,044 - 37,891,597 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1437,675,678 - 37,716,181 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0437,863,646 - 37,904,164 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0438,373,604 - 38,414,131 (-)NCBIUU_Cfam_GSD_1.0
SFXN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl282,025,820 - 82,057,564 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1282,025,799 - 82,057,629 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2283,647,666 - 83,679,493 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SFXN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12377,625,740 - 77,675,935 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2377,625,775 - 77,674,907 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666034912,795 - 964,512 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sfxn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473314,403,957 - 14,452,280 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473314,404,646 - 14,451,943 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000020037   ⟹   ENSSTOP00000022072
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936609729,589 - 754,774 (-)Ensembl
RefSeq Acc Id: XM_005334102   ⟹   XP_005334159
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721392,004,958 - 92,032,125 (-)NCBI
SpeTri2.0NW_004936609727,621 - 754,806 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040273787   ⟹   XP_040129721
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721392,004,958 - 92,032,126 (-)NCBI
RefSeq Acc Id: XM_040273788   ⟹   XP_040129722
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721392,004,958 - 92,032,074 (-)NCBI
RefSeq Acc Id: XR_005728662
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721392,009,160 - 92,032,126 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005334159 (Get FASTA)   NCBI Sequence Viewer  
  XP_040129721 (Get FASTA)   NCBI Sequence Viewer  
  XP_040129722 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000022072.2
GenBank Protein KAG3265223 (Get FASTA)   NCBI Sequence Viewer  
  KAG3265224 (Get FASTA)   NCBI Sequence Viewer  
  KAG3265225 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005334159   ⟸   XM_005334102
- Peptide Label: isoform X2
- UniProtKB: I3NCH5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040129721   ⟸   XM_040273787
- Peptide Label: isoform X1
- UniProtKB: I3NCH5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040129722   ⟸   XM_040273788
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000022072   ⟸   ENSSTOT00000020037


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028251 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000020037.2 UniProtKB/TrEMBL
InterPro Mtc UniProtKB/TrEMBL
NCBI Gene Sfxn1 ENTREZGENE
PANTHER PTHR11153 UniProtKB/TrEMBL
  SIDEROFLEXIN-1 UniProtKB/TrEMBL
Pfam SFXNs UniProtKB/TrEMBL
UniProt I3NCH5 ENTREZGENE, UniProtKB/TrEMBL