Smim6 (small integral membrane protein 6) - Rat Genome Database

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Gene: Smim6 (small integral membrane protein 6) Ictidomys tridecemlineatus
Analyze
Symbol: Smim6
Name: small integral membrane protein 6
RGD ID: 12562271
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,562,744 - 5,564,145 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936594847,015 - 849,196 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Smim6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,562,744 - 5,564,145 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936594847,015 - 849,196 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMIM6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381775,646,251 - 75,647,974 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1775,646,243 - 75,647,975 (+)EnsemblGRCh38hg38GRCh38
GRCh371773,642,331 - 73,644,054 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera1770,232,732 - 70,234,143 (+)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1769,066,500 - 69,067,911 (+)NCBIHuRef
CHM1_11773,707,370 - 73,708,781 (+)NCBICHM1_1
T2T-CHM13v2.01776,539,438 - 76,541,160 (+)NCBIT2T-CHM13v2.0
Smim6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,802,843 - 115,804,743 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,802,843 - 115,804,746 (+)EnsemblGRCm39 Ensembl
GRCm3811115,912,017 - 115,913,917 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11115,912,017 - 115,913,920 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711115,773,331 - 115,775,231 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera11127,674,997 - 127,676,896 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.91NCBI
Smim6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810101,643,129 - 101,652,465 (+)NCBIGRCr8
mRatBN7.210101,144,577 - 101,147,160 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.010104,461,510 - 104,470,238 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.010103,821,094 - 103,824,024 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1099,719,257 - 99,727,985 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Smim6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555066,590,028 - 6,592,474 (-)NCBIChiLan1.0ChiLan1.0
SMIM6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21991,690,666 - 91,692,399 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11796,515,239 - 96,516,964 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01769,595,421 - 69,598,968 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11775,147,614 - 75,149,406 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1775,148,806 - 75,148,994 (+)Ensemblpanpan1.1panPan2
SMIM6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.194,920,708 - 4,922,713 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl94,920,989 - 4,921,171 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha95,600,931 - 5,602,940 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.095,591,718 - 5,593,727 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.195,631,117 - 5,632,301 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.095,741,025 - 5,743,034 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.095,802,137 - 5,804,146 (-)NCBIUU_Cfam_GSD_1.0
SMIM6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11646,032,601 - 46,033,784 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607716,792,414 - 16,794,146 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smim6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248015,549,373 - 5,552,386 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040268450   ⟹   XP_040124384
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244056025,562,744 - 5,564,145 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040124384 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000028396.1
GenBank Protein KAG3268492 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040124384   ⟸   XM_040268450
- UniProtKB: A0A287D481 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000033976 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000033948.1 UniProtKB/TrEMBL
NCBI Gene Smim6 ENTREZGENE
UniProt A0A287D481 ENTREZGENE, UniProtKB/TrEMBL