Arl4a (ADP ribosylation factor like GTPase 4A) - Rat Genome Database

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Gene: Arl4a (ADP ribosylation factor like GTPase 4A) Ictidomys tridecemlineatus
Analyze
Symbol: Arl4a
Name: ADP ribosylation factor like GTPase 4A
RGD ID: 12561567
Description: ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); nucleotide binding (inferred); INVOLVED IN brown fat cell differentiation (ortholog); ASSOCIATED WITH genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); nucleolus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ADP ribosylation factor like GTPase 4A, transcript variant X1; ADP ribosylation factor like GTPase 4A, transcript variant X2; ADP ribosylation factor like GTPase 4A, transcript variant X3; ADP-ribosylation factor-like protein 4A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511872,030,368 - 72,032,687 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936795355,256 - 357,515 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936795355,256 - 357,560 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
nucleolus  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)
plasma membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Arl4a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511872,030,368 - 72,032,687 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936795355,256 - 357,515 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936795355,256 - 357,560 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARL4A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38712,686,903 - 12,690,958 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl712,686,856 - 12,690,958 (+)EnsemblGRCh38hg38GRCh38
GRCh37712,726,528 - 12,730,583 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36712,693,006 - 12,697,084 (+)NCBINCBI36Build 36hg18NCBI36
Celera712,704,156 - 12,708,234 (+)NCBICelera
Cytogenetic Map7p21.3NCBI
HuRef712,607,443 - 12,611,550 (+)NCBIHuRef
CHM1_1712,726,522 - 12,730,629 (+)NCBICHM1_1
T2T-CHM13v2.0712,817,976 - 12,822,031 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2712,777,588 - 12,781,695 (+)NCBI
Arl4a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391240,083,290 - 40,087,986 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1240,055,446 - 40,088,024 (-)EnsemblGRCm39 Ensembl
GRCm381240,033,291 - 40,037,987 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1240,005,447 - 40,038,025 (-)EnsemblGRCm38mm10GRCm38
MGSCv371240,759,878 - 40,764,574 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361240,543,714 - 40,548,410 (-)NCBIMGSCv36mm8
Celera1241,461,600 - 41,466,296 (-)NCBICelera
Cytogenetic Map12B1NCBI
cM Map1218.06NCBI
Arl4a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8662,809,287 - 62,811,297 (-)NCBIGRCr8
mRatBN7.2657,079,496 - 57,084,156 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl657,078,812 - 57,085,066 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx657,345,445 - 57,347,455 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0657,660,381 - 57,662,391 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0657,151,623 - 57,153,633 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0659,945,926 - 59,950,586 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl659,948,577 - 59,950,586 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0669,534,037 - 69,538,697 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4659,212,599 - 59,214,609 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1659,215,725 - 59,217,735 (-)NCBI
Celera656,132,664 - 56,134,674 (-)NCBICelera
Cytogenetic Map6q21NCBI
Arl4a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541016,400,342 - 16,403,200 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541016,400,342 - 16,403,200 (+)NCBIChiLan1.0ChiLan1.0
LOC100986273
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2617,553,211 - 17,558,311 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1765,877,927 - 65,881,296 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0713,379,627 - 13,383,603 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1712,723,991 - 12,727,761 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl712,725,299 - 12,725,901 (+)Ensemblpanpan1.1panPan2
ARL4A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11427,522,766 - 27,526,404 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1427,034,654 - 27,036,978 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01427,349,211 - 27,351,535 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1427,349,181 - 27,351,535 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11427,519,115 - 27,521,438 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01427,249,798 - 27,252,122 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01427,566,321 - 27,568,645 (+)NCBIUU_Cfam_GSD_1.0
ARL4A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl982,225,272 - 82,231,900 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1982,224,985 - 82,228,951 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2990,366,105 - 90,368,735 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARL4A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12145,407,194 - 45,409,476 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604259,064,746 - 59,068,941 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arl4a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473917,254,603 - 17,256,200 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473917,254,603 - 17,256,833 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000005145   ⟹   ENSSTOP00000004617
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936795355,256 - 357,515 (-)Ensembl
RefSeq Acc Id: XM_005340414   ⟹   XP_005340471
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511872,030,368 - 72,032,687 (+)NCBI
SpeTri2.0NW_004936795355,256 - 357,560 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013365246   ⟹   XP_013220700
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511872,030,368 - 72,032,687 (+)NCBI
SpeTri2.0NW_004936795355,256 - 357,560 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021720282   ⟹   XP_021575957
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511872,030,368 - 72,032,687 (+)NCBI
SpeTri2.0NW_004936795355,256 - 357,560 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040291712   ⟹   XP_040147646
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511872,030,368 - 72,032,687 (+)NCBI
RefSeq Acc Id: XP_013220700   ⟸   XM_013365246
- UniProtKB: I3M5J8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005340471   ⟸   XM_005340414
- UniProtKB: I3M5J8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021575957   ⟸   XM_021720282
- UniProtKB: I3M5J8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040147646   ⟸   XM_040291712
- UniProtKB: I3M5J8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000004617   ⟸   ENSSTOT00000005145


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000005161 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000005145.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase_ARF/SAR UniProtKB/TrEMBL
NCBI Gene Arl4a ENTREZGENE
PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 4A UniProtKB/TrEMBL
  PTHR11711 UniProtKB/TrEMBL
Pfam Arf UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE ARF UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
SMART ARF UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  SAR UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt I3M5J8 ENTREZGENE, UniProtKB/TrEMBL