Vamp7 (vesicle associated membrane protein 7) - Rat Genome Database
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Gene: Vamp7 (vesicle associated membrane protein 7) Ictidomys tridecemlineatus
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Symbol: Vamp7
Name: vesicle associated membrane protein 7
RGD ID: 12560475
Description: ENCODES a protein that exhibits SNAP receptor activity (ortholog); syntaxin binding (ortholog); INVOLVED IN autophagosome maturation (ortholog); calcium-ion regulated exocytosis (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH autistic disorder (ortholog); head and neck squamous cell carcinoma (ortholog); papillomavirus infectious disease (ortholog); FOUND IN apical part of cell (ortholog); azurophil granule membrane (ortholog); cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: vesicle-associated membrane protein 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936958345,055 - 393,384 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Vamp7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936958345,055 - 393,384 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VAMP7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX155,881,345 - 155,943,769 (+)EnsemblGRCh38hg38GRCh38
GRCh38Y57,067,838 - 57,130,289 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38X155,881,318 - 155,943,769 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X155,111,008 - 155,173,433 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37Y59,214,014 - 59,276,439 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37Y59,213,949 - 59,276,439 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37X155,110,943 - 155,173,433 (+)ENTREZGENEGRCh37GRCh37hg19GRCh37
Build 36X154,764,207 - 154,826,614 (+)NCBINCBI36hg18NCBI36
Build 36Y57,623,407 - 57,685,814 (+)NCBINCBI36hg18NCBI36
Build 34Y57,552,143 - 57,614,551NCBI
CeleraX155,267,418 - 155,329,920 (+)NCBI
Cytogenetic MapXq28 and Yq12NCBI
HuRefX143,593,932 - 143,656,425 (+)NCBIHuRef
CHM1_1X155,022,569 - 155,085,064 (+)NCBICHM1_1
Vamp7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Cytogenetic MapX NCBI
Vamp7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21216,728,477 - 16,764,261 (+)NCBI
Rnor_6.0 Ensembl1218,996,591 - 19,030,381 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01218,996,566 - 19,033,714 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01220,989,825 - 21,090,967 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41217,248,700 - 17,278,193 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11217,238,221 - 17,267,715 (-)NCBI
Celera1218,674,387 - 18,700,778 (+)NCBICelera
Cytogenetic Map12q11NCBI
Vamp7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495559418,727 - 72,654 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495559420,496 - 72,648 (-)NCBIChiLan1.0ChiLan1.0
VAMP7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X155,257,593 - 155,320,215 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX155,257,185 - 155,320,215 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X145,362,432 - 145,425,097 (+)NCBIMhudiblu_PPA_v0panPan3
VAMP7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 EnsemblX123,717,446 - 123,783,014 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1X123,717,524 - 123,783,781 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
VAMP7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX125,863,291 - 125,917,227 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X125,863,266 - 125,917,232 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
VAMP7
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X129,937,026 - 129,984,071 (+)NCBI
ChlSab1.1 EnsemblX129,937,046 - 129,984,119 (+)Ensembl
Vamp7
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462498040,937 - 94,547 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005342078   ⟹   XP_005342135
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_004936958345,055 - 393,384 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013366076   ⟹   XP_013221530
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_004936958345,056 - 393,384 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005342135 (Get FASTA)   NCBI Sequence Viewer  
  XP_013221530 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013221530   ⟸   XM_013366076
- UniProtKB: I3NDB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005342135   ⟸   XM_005342078
- UniProtKB: I3NDB5 (UniProtKB/TrEMBL)
- Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025036 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000022362 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000021870 ENTREZGENE, UniProtKB/TrEMBL
InterPro Longin-like_dom_sf UniProtKB/TrEMBL
  Longin_dom UniProtKB/TrEMBL
  Synaptobrevin UniProtKB/TrEMBL
  V_SNARE_CC UniProtKB/TrEMBL
NCBI Gene Vamp7 ENTREZGENE
Pfam Longin UniProtKB/TrEMBL
  Synaptobrevin UniProtKB/TrEMBL
PRINTS SYNAPTOBREVN UniProtKB/TrEMBL
PROSITE LONGIN UniProtKB/TrEMBL
  SYNAPTOBREVIN UniProtKB/TrEMBL
  V_SNARE UniProtKB/TrEMBL
SMART Longin UniProtKB/TrEMBL
Superfamily-SCOP SSF64356 UniProtKB/TrEMBL
UniProt I3NDB5 ENTREZGENE, UniProtKB/TrEMBL