Atad2 (ATPase family AAA domain containing 2) - Rat Genome Database

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Gene: Atad2 (ATPase family AAA domain containing 2) Ictidomys tridecemlineatus
Analyze
Symbol: Atad2
Name: ATPase family AAA domain containing 2
RGD ID: 12559776
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); chromatin binding (inferred); INVOLVED IN positive regulation of DNA-templated transcription (inferred); positive regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH genetic disease (ortholog); trichorhinophalangeal syndrome type I (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATPase family AAA domain-containing protein 2; ATPase family, AAA domain containing 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530316,560,734 - 16,617,531 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647023,986,967 - 24,043,082 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647023,986,895 - 24,043,609 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atad2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530316,560,734 - 16,617,531 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647023,986,967 - 24,043,082 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647023,986,895 - 24,043,609 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATAD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388123,319,850 - 123,416,350 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8123,319,850 - 123,416,350 (-)EnsemblGRCh38hg38GRCh38
GRCh378124,332,090 - 124,408,687 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368124,401,922 - 124,477,868 (-)NCBINCBI36Build 36hg18NCBI36
Build 348124,401,921 - 124,477,868NCBI
Celera8120,520,748 - 120,596,364 (-)NCBICelera
Cytogenetic Map8q24.13NCBI
HuRef8119,657,854 - 119,734,371 (-)NCBIHuRef
CHM1_18124,372,552 - 124,449,135 (-)NCBICHM1_1
T2T-CHM13v2.08124,450,947 - 124,547,457 (-)NCBIT2T-CHM13v2.0
Atad2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391557,957,440 - 57,998,516 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1557,957,440 - 57,998,478 (-)EnsemblGRCm39 Ensembl
GRCm381558,094,044 - 58,135,525 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1558,094,044 - 58,135,082 (-)EnsemblGRCm38mm10GRCm38
MGSCv371557,925,602 - 57,966,637 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361557,924,128 - 57,965,152 (-)NCBIMGSCv36mm8
Celera1559,614,067 - 59,655,014 (-)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1524.32NCBI
Atad2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8791,523,626 - 91,566,238 (-)NCBIGRCr8
mRatBN7.2789,634,123 - 89,676,738 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl789,634,123 - 89,676,738 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx791,510,806 - 91,552,656 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0793,712,080 - 93,753,926 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0793,529,908 - 93,571,726 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0797,984,754 - 98,027,379 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl797,984,862 - 98,026,052 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0798,589,668 - 98,631,755 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4794,808,296 - 94,851,986 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1794,822,723 - 94,886,549 (-)NCBI
Celera786,405,901 - 86,448,563 (-)NCBICelera
Cytogenetic Map7q33NCBI
Atad2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555402,166,636 - 2,227,360 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555402,166,708 - 2,228,077 (-)NCBIChiLan1.0ChiLan1.0
ATAD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27140,751,418 - 140,848,170 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18116,262,588 - 116,359,334 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08120,014,794 - 120,091,465 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18122,770,893 - 122,846,957 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8122,770,893 - 122,846,958 (-)Ensemblpanpan1.1panPan2
ATAD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11321,667,214 - 21,733,028 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1321,667,221 - 21,732,939 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1321,632,745 - 21,707,473 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01322,007,285 - 22,082,006 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1322,007,040 - 22,073,254 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11321,735,686 - 21,810,589 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01321,838,143 - 21,912,711 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01322,081,783 - 22,156,297 (-)NCBIUU_Cfam_GSD_1.0
ATAD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl416,012,561 - 16,082,638 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1416,012,278 - 16,082,343 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2416,755,859 - 16,823,919 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATAD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18117,894,362 - 117,977,699 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8117,895,112 - 117,977,167 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603922,235,801 - 22,339,390 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atad2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473531,570,451 - 31,636,552 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473531,570,336 - 31,637,253 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000014887   ⟹   ENSSTOP00000013336
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647023,986,967 - 24,043,082 (+)Ensembl
RefSeq Acc Id: XM_005316183   ⟹   XP_005316240
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530316,560,735 - 16,617,531 (+)NCBI
SpeTri2.0NW_00493647023,986,895 - 24,043,609 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040293690   ⟹   XP_040149624
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530316,560,734 - 16,617,531 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005316240 (Get FASTA)   NCBI Sequence Viewer  
  XP_040149624 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000013336.2
GenBank Protein KAG3273652 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005316240   ⟸   XM_005316183
- Peptide Label: isoform X1
- UniProtKB: I3MNR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040149624   ⟸   XM_040293690
- Peptide Label: isoform X2
- UniProtKB: I3MNR4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000013336   ⟸   ENSSTOT00000014887
Protein Domains
Bromo


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014877 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014887.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.8.60 UniProtKB/TrEMBL
  1.20.920.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/TrEMBL
  ATAD2-like UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/TrEMBL
  ATPase_AAA_CS UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Atad2 ENTREZGENE
PANTHER PTHR23069 UniProtKB/TrEMBL
  PTHR23069:SF4 UniProtKB/TrEMBL
Pfam AAA UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
PRINTS BROMODOMAIN UniProtKB/TrEMBL
PROSITE AAA UniProtKB/TrEMBL
  BROMODOMAIN_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
  BROMO UniProtKB/TrEMBL
Superfamily-SCOP SSF47370 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt I3MNR4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-22 Atad2  ATPase family AAA domain containing 2    ATPase family, AAA domain containing 2  Symbol and/or name change 5135510 APPROVED