Tmem117 (transmembrane protein 117) - Rat Genome Database

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Gene: Tmem117 (transmembrane protein 117) Ictidomys tridecemlineatus
Analyze
Symbol: Tmem117
Name: transmembrane protein 117
RGD ID: 12559578
Description: INVOLVED IN intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (inferred); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); cholestasis (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494570,399,336 - 70,837,062 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365122,327,730 - 2,765,697 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365122,327,765 - 2,765,488 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tmem117
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494570,399,336 - 70,837,062 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365122,327,730 - 2,765,697 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365122,327,765 - 2,765,488 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM117
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381243,795,802 - 44,399,108 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1243,835,967 - 44,389,762 (+)EnsemblGRCh38hg38GRCh38
GRCh371244,229,884 - 44,783,541 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361242,516,229 - 43,069,808 (+)NCBINCBI36Build 36hg18NCBI36
Celera1243,033,310 - 43,586,834 (+)NCBICelera
Cytogenetic Map12q12NCBI
HuRef1241,258,562 - 41,811,733 (+)NCBIHuRef
CHM1_11244,194,944 - 44,748,526 (+)NCBICHM1_1
T2T-CHM13v2.01243,754,527 - 44,357,775 (+)NCBIT2T-CHM13v2.0
Tmem117
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391594,527,066 - 94,993,978 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1594,527,113 - 94,993,979 (+)EnsemblGRCm39 Ensembl
GRCm381594,629,185 - 95,096,097 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1594,629,232 - 95,096,098 (+)EnsemblGRCm38mm10GRCm38
MGSCv371594,459,616 - 94,926,528 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361594,457,365 - 94,924,277 (+)NCBIMGSCv36mm8
Celera1596,786,318 - 97,241,098 (+)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1548.65NCBI
Tmem117
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87127,636,862 - 128,098,944 (+)NCBIGRCr8
mRatBN7.27125,757,591 - 126,219,692 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7125,757,591 - 126,219,690 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7127,542,957 - 128,011,320 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07129,768,855 - 130,236,843 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07129,670,078 - 130,138,577 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07135,880,294 - 136,403,012 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7136,182,224 - 136,403,012 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07135,793,516 - 136,049,791 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.07135,536,756 - 135,651,323 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47133,383,932 - 133,634,816 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7122,147,273 - 122,599,621 (+)NCBICelera
Cytogenetic Map7q35NCBI
Tmem117
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555003,087,715 - 3,568,105 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555003,097,088 - 3,566,616 (+)NCBIChiLan1.0ChiLan1.0
TMEM117
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21049,783,679 - 50,337,965 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11249,780,437 - 50,334,724 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01244,344,887 - 44,895,824 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11245,212,351 - 45,765,615 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1245,213,440 - 45,757,058 (-)Ensemblpanpan1.1panPan2
TMEM117
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1279,782,805 - 10,246,635 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl279,782,805 - 10,235,028 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2736,061,549 - 36,524,910 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0279,972,102 - 10,435,727 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl279,972,215 - 10,435,702 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1279,785,292 - 10,247,055 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0279,817,848 - 10,281,655 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02736,303,255 - 36,765,362 (+)NCBIUU_Cfam_GSD_1.0
TMEM117
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl574,917,463 - 75,406,367 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1574,917,081 - 75,402,839 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2577,730,272 - 78,225,347 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM117
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11140,049,469 - 40,590,373 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037205,885,363 - 206,461,018 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem117
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248168,151,171 - 8,730,823 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248168,150,836 - 8,739,599 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000020745   ⟹   ENSSTOP00000015051
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365122,327,730 - 2,765,697 (+)Ensembl
RefSeq Acc Id: XM_005324852   ⟹   XP_005324909
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494570,399,336 - 70,837,061 (-)NCBI
SpeTri2.0NW_0049365122,327,765 - 2,765,488 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040280778   ⟹   XP_040136712
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494570,399,336 - 70,837,062 (-)NCBI
RefSeq Acc Id: XM_040280779   ⟹   XP_040136713
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494570,399,336 - 70,837,061 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005324909 (Get FASTA)   NCBI Sequence Viewer  
  XP_040136712 (Get FASTA)   NCBI Sequence Viewer  
  XP_040136713 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000015051.2
GenBank Protein KAG3292125 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005324909   ⟸   XM_005324852
- Peptide Label: isoform X1
- UniProtKB: I3MSF6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040136712   ⟸   XM_040280778
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040136713   ⟸   XM_040280779
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000015051   ⟸   ENSSTOT00000020745


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025184 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000020745.2 UniProtKB/TrEMBL
InterPro TMEM117 UniProtKB/TrEMBL
NCBI Gene Tmem117 ENTREZGENE
PANTHER PTHR31226 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 117 UniProtKB/TrEMBL
Pfam TMEM117 UniProtKB/TrEMBL
UniProt I3MSF6 ENTREZGENE, UniProtKB/TrEMBL