B4galt1 (beta-1,4-galactosyltransferase 1) - Rat Genome Database

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Gene: B4galt1 (beta-1,4-galactosyltransferase 1) Ictidomys tridecemlineatus
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Symbol: B4galt1
Name: beta-1,4-galactosyltransferase 1
RGD ID: 12558958
Description: ENCODES a protein that exhibits alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); cytoskeletal protein binding (ortholog); INVOLVED IN acute inflammatory response (ortholog); angiogenesis involved in wound healing (ortholog); apoptotic process involved in mammary gland involution (ortholog); PARTICIPATES IN galactose metabolic pathway; galactosemia pathway; Glut1 deficiency syndrome pathway; ASSOCIATED WITH congenital disorder of glycosylation (ortholog); congenital disorder of glycosylation type IId (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947165,112,211 - 165,166,434 (-)NCBI
SpeTri2.0NW_0049365241,659,791 - 1,713,971 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
B4galt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947165,112,211 - 165,166,434 (-)NCBI
SpeTri2.0NW_0049365241,659,791 - 1,713,971 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B4GALT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38933,104,077 - 33,185,089 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl933,104,082 - 33,167,356 (-)EnsemblGRCh38hg38GRCh38
GRCh37933,104,075 - 33,167,334 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36933,100,642 - 33,157,236 (-)NCBINCBI36hg18NCBI36
Build 34933,100,641 - 33,157,231NCBI
Celera933,041,647 - 33,098,362 (-)NCBI
Cytogenetic Map9p21.1NCBI
HuRef933,068,632 - 33,125,120 (-)NCBIHuRef
CHM1_1933,110,422 - 33,167,124 (-)NCBICHM1_1
T2T-CHM13v2.0933,120,636 - 33,185,969 (-)NCBI
B4galt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39440,804,602 - 40,855,711 (-)NCBIGRCm39mm39
GRCm39 Ensembl440,804,602 - 40,854,005 (-)Ensembl
GRCm38440,804,602 - 40,853,984 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl440,804,602 - 40,854,005 (-)EnsemblGRCm38mm10GRCm38
MGSCv37440,751,635 - 40,801,031 (-)NCBIGRCm37mm9NCBIm37
MGSCv36440,993,273 - 41,042,669 (-)NCBImm8
Celera440,465,334 - 40,514,995 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map420.46NCBI
B4galt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2555,935,614 - 55,982,461 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl555,935,615 - 55,982,461 (-)Ensembl
Rnor_6.0557,121,768 - 57,168,610 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl557,121,769 - 57,168,610 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0561,653,278 - 61,700,179 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4558,196,388 - 58,243,231 (-)NCBIRGSC3.4rn4RGSC3.4
Celera554,547,735 - 54,594,543 (-)NCBICelera
Cytogenetic Map5q22NCBI
B4galt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554722,490,661 - 2,536,317 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554722,490,649 - 2,536,053 (+)NCBIChiLan1.0ChiLan1.0
B4GALT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1933,697,551 - 33,754,192 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl933,691,733 - 33,754,192 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0932,889,124 - 32,945,759 (-)NCBIMhudiblu_PPA_v0panPan3
B4GALT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11150,223,880 - 50,276,745 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1150,226,242 - 50,276,730 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1148,852,300 - 48,904,681 (-)NCBI
ROS_Cfam_1.01151,162,293 - 51,214,628 (-)NCBI
ROS_Cfam_1.0 Ensembl1151,144,069 - 51,214,773 (-)Ensembl
UMICH_Zoey_3.11149,827,305 - 49,879,364 (-)NCBI
UNSW_CanFamBas_1.01149,693,975 - 49,746,100 (-)NCBI
UU_Cfam_GSD_1.01150,459,162 - 50,511,219 (-)NCBI
B4GALT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1033,317,305 - 33,381,285 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11033,317,295 - 33,381,285 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21037,574,201 - 37,635,284 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103219294
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11247,104,750 - 47,162,157 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1247,104,789 - 47,162,173 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366703211,002 - 21,137 (+)NCBIVero_WHO_p1.0
B4galt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473637,848,117 - 37,927,980 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462473637,848,431 - 37,927,291 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005326185   ⟹   XP_005326242
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947165,112,211 - 165,166,403 (-)NCBI
SpeTri2.0NW_0049365241,659,791 - 1,713,971 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005733991
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947165,120,549 - 165,166,434 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005326242 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3287376 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005326242   ⟸   XM_005326185
- UniProtKB: I3M5Q2 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Glyco_transf_7C   Glyco_transf_7N


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000005241 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000004695 ENTREZGENE
  ENSSTOP00000004695.2 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000005233.3 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.10 UniProtKB/TrEMBL
InterPro Galactosyl_T UniProtKB/TrEMBL
  Galactosyl_T_C UniProtKB/TrEMBL
  Galactosyl_T_N UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
NCBI Gene B4galt1 ENTREZGENE
PANTHER PTHR19300 UniProtKB/TrEMBL
Pfam Glyco_transf_7C UniProtKB/TrEMBL
  Glyco_transf_7N UniProtKB/TrEMBL
PRINTS B14GALTRFASE UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt I3M5Q2 ENTREZGENE, UniProtKB/TrEMBL