Ffar1 (free fatty acid receptor 1) - Rat Genome Database

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Gene: Ffar1 (free fatty acid receptor 1) Ictidomys tridecemlineatus
Analyze
Symbol: Ffar1
Name: free fatty acid receptor 1
RGD ID: 12558362
Description: ENCODES a protein that exhibits bioactive lipid receptor activity (ortholog); fatty acid binding (ortholog); G protein-coupled receptor activity (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); glucose homeostasis (ortholog); insulin secretion (ortholog); ASSOCIATED WITH Brugada syndrome 5 (ortholog); dystonia (ortholog); genetic disease (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934910,688,445 - 10,690,821 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936570955,102 - 957,437 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ffar1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934910,688,445 - 10,690,821 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936570955,102 - 957,437 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FFAR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381935,347,902 - 35,353,864 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1935,347,902 - 35,353,864 (+)EnsemblGRCh38hg38GRCh38
GRCh371935,838,805 - 35,844,766 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361940,534,295 - 40,535,197 (+)NCBINCBI36Build 36hg18NCBI36
Build 341940,534,294 - 40,535,197NCBI
Celera1932,555,895 - 32,556,817 (+)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1932,350,940 - 32,351,862 (+)NCBIHuRef
CHM1_11935,844,054 - 35,844,976 (+)NCBICHM1_1
T2T-CHM13v2.01937,892,634 - 37,898,598 (+)NCBIT2T-CHM13v2.0
Ffar1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39730,559,993 - 30,560,895 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl730,556,815 - 30,560,989 (-)EnsemblGRCm39 Ensembl
GRCm38730,860,568 - 30,861,470 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl730,857,390 - 30,861,564 (-)EnsemblGRCm38mm10GRCm38
MGSCv37731,645,587 - 31,646,489 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36730,569,328 - 30,570,230 (-)NCBIMGSCv36mm8
Celera725,444,014 - 25,444,916 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map719.25NCBI
Ffar1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8195,238,785 - 95,239,689 (-)NCBIGRCr8
mRatBN7.2186,111,368 - 86,112,272 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl186,111,368 - 86,112,272 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx191,526,041 - 91,526,945 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,992,210 - 99,993,114 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0193,284,340 - 93,285,244 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0189,308,475 - 89,309,379 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,308,475 - 89,309,379 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0190,463,925 - 90,464,829 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,917,624 - 85,918,528NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1185,995,734 - 85,996,639NCBI
Cytogenetic Map1q21NCBI
Ffar1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554684,626,748 - 4,627,650 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554684,626,567 - 4,627,683 (+)NCBIChiLan1.0ChiLan1.0
FFAR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22041,364,498 - 41,368,103 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11943,345,490 - 43,351,174 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01932,298,259 - 32,300,601 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11941,034,901 - 41,037,219 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1941,034,905 - 41,035,807 (+)Ensemblpanpan1.1panPan2
FFAR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11117,257,005 - 117,258,799 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1116,659,986 - 116,661,656 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01117,856,745 - 117,858,415 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1117,856,767 - 117,857,666 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11117,416,141 - 117,421,463 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01117,045,554 - 117,047,224 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01118,101,028 - 118,102,774 (-)NCBIUU_Cfam_GSD_1.0
FFAR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1630,289,268 - 30,290,838 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl630,289,285 - 30,290,187 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660738,078,579 - 8,080,768 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ffar1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247948,206,491 - 8,207,393 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247948,206,491 - 8,207,393 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005330659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005330659   ⟹   XP_005330716
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934910,688,445 - 10,690,821 (+)NCBI
SpeTri2.0NW_004936570955,102 - 957,437 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005330716 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3255840 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005330716   ⟸   XM_005330659
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Ffar1 ENTREZGENE