Fgf3 (fibroblast growth factor 3) - Rat Genome Database

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Gene: Fgf3 (fibroblast growth factor 3) Ictidomys tridecemlineatus
Analyze
Symbol: Fgf3
Name: fibroblast growth factor 3
RGD ID: 12557025
Description: ENCODES a protein that exhibits fibroblast growth factor receptor binding (inferred); growth factor activity (inferred); INVOLVED IN fibroblast growth factor receptor signaling pathway (ortholog); organ induction (ortholog); otic vesicle formation (ortholog); ASSOCIATED WITH Acute Otitis Media (ortholog); Aicardi-Goutieres Syndrome 3 (ortholog); Breast Neoplasms (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049474,426,011 - 4,433,296 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936599868,634 - 875,464 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936599868,634 - 875,464 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Fgf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049474,426,011 - 4,433,296 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936599868,634 - 875,464 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936599868,634 - 875,464 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FGF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381169,809,968 - 69,819,416 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1169,809,968 - 69,819,416 (-)EnsemblGRCh38hg38GRCh38
GRCh371169,624,736 - 69,634,184 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361169,333,917 - 69,343,129 (-)NCBINCBI36Build 36hg18NCBI36
Build 341169,333,916 - 69,343,129NCBI
Celera1166,921,757 - 66,931,244 (-)NCBICelera
Cytogenetic Map11q13.3NCBI
HuRef1165,917,066 - 65,926,354 (-)NCBIHuRef
CHM1_11169,507,656 - 69,517,018 (-)NCBICHM1_1
T2T-CHM13v2.01169,826,890 - 69,836,324 (-)NCBIT2T-CHM13v2.0
Fgf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397144,392,349 - 144,397,085 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7144,391,820 - 144,398,173 (+)EnsemblGRCm39 Ensembl
GRCm387144,838,612 - 144,843,348 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7144,838,083 - 144,844,436 (+)EnsemblGRCm38mm10GRCm38
MGSCv377152,024,517 - 152,029,253 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367144,648,098 - 144,652,378 (+)NCBIMGSCv36mm8
Celera7144,602,541 - 144,607,277 (+)NCBICelera
Cytogenetic Map7F5NCBI
cM Map788.85NCBI
Fgf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81209,430,457 - 209,434,832 (+)NCBIGRCr8
mRatBN7.21200,001,162 - 200,005,539 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1200,001,261 - 200,005,187 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1208,384,758 - 208,388,679 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01215,468,695 - 215,472,617 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01208,142,888 - 208,146,810 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01218,003,018 - 218,006,942 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1218,003,018 - 218,006,942 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01224,872,403 - 224,876,327 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41205,269,480 - 205,273,404 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11205,422,932 - 205,426,857 (+)NCBI
Celera1197,559,343 - 197,563,267 (+)NCBICelera
Cytogenetic Map1q42NCBI
Fgf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542216,333,363 - 16,339,853 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542216,333,363 - 16,339,853 (+)NCBIChiLan1.0ChiLan1.0
FGF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2970,775,476 - 70,785,000 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11171,818,641 - 71,828,121 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01164,905,658 - 64,915,175 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11168,197,962 - 68,207,036 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1168,197,962 - 68,207,042 (-)Ensemblpanpan1.1panPan2
FGF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11848,382,819 - 48,388,453 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1848,383,222 - 48,389,009 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1846,990,863 - 46,998,466 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01849,057,796 - 49,065,400 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1849,057,796 - 49,065,400 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11848,504,675 - 48,512,248 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01848,091,070 - 48,098,649 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01848,836,772 - 48,844,382 (+)NCBIUU_Cfam_GSD_1.0
FGF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl23,489,009 - 3,497,533 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.123,489,208 - 3,496,532 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.221,966,360 - 1,973,649 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FGF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114,746,195 - 4,755,654 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14,746,696 - 4,754,924 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038102,019,934 - 102,028,917 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fgf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476717,353,989 - 17,360,705 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476717,353,989 - 17,360,857 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005333533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000027383   ⟹   ENSSTOP00000020960
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936599868,634 - 875,464 (+)Ensembl
RefSeq Acc Id: XM_005333533   ⟹   XP_005333590
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049474,426,011 - 4,433,296 (+)NCBI
SpeTri2.0NW_004936599868,634 - 875,464 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005333590 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000020960.2
GenBank Protein KAG3284466 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005333590   ⟸   XM_005333533
- UniProtKB: I3N9B4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000020960   ⟸   ENSSTOT00000027383


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000023034 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000027383.2 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
InterPro Fibroblast_GF_fam UniProtKB/TrEMBL
  IL1/FGF UniProtKB/TrEMBL
NCBI Gene Fgf3 ENTREZGENE
PANTHER PTHR11486 UniProtKB/TrEMBL
  PTHR11486:SF26 UniProtKB/TrEMBL
Pfam FGF UniProtKB/TrEMBL
PRINTS HBGFFGF UniProtKB/TrEMBL
  IL1HBGF UniProtKB/TrEMBL
PROSITE HBGF_FGF UniProtKB/TrEMBL
SMART FGF UniProtKB/TrEMBL
Superfamily-SCOP SSF50353 UniProtKB/TrEMBL
UniProt I3N9B4 ENTREZGENE, UniProtKB/TrEMBL