Gcdh (glutaryl-CoA dehydrogenase) - Rat Genome Database

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Gene: Gcdh (glutaryl-CoA dehydrogenase) Ictidomys tridecemlineatus
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Symbol: Gcdh
Name: glutaryl-CoA dehydrogenase
RGD ID: 12556791
Description: ENCODES a protein that exhibits fatty-acyl-CoA binding (ortholog); flavin adenine dinucleotide binding (ortholog); glutaryl-CoA dehydrogenase activity (ortholog); INVOLVED IN acyl-CoA metabolic process (ortholog); fatty acid beta-oxidation using acyl-CoA dehydrogenase (ortholog); fatty acid oxidation (ortholog); PARTICIPATES IN 2-aminoadipic 2-oxoadipic aciduria pathway; carnitine palmitoyltransferase I deficiency pathway; ethylmalonic encephalopathy pathway; ASSOCIATED WITH glutaric acidemia I (ortholog); Glutaric Aciduria (ortholog); intellectual disability (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: glutaryl-CoA dehydrogenase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,392,780 - 208,399,126 (-)NCBI
SpeTri2.0NW_0049366591,955,601 - 1,961,925 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gcdh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,392,780 - 208,399,126 (-)NCBI
SpeTri2.0NW_0049366591,955,601 - 1,961,925 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GCDH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1912,891,160 - 12,914,207 (+)EnsemblGRCh38hg38GRCh38
GRCh381912,891,129 - 12,899,999 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371913,001,943 - 13,010,813 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361912,862,974 - 12,871,783 (+)NCBINCBI36hg18NCBI36
Build 341912,862,973 - 12,871,782NCBI
Celera1912,891,682 - 12,900,491 (+)NCBI
Cytogenetic Map19p13.13NCBI
HuRef1912,573,809 - 12,582,680 (+)NCBIHuRef
CHM1_11913,002,442 - 13,011,310 (+)NCBICHM1_1
Gcdh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,613,016 - 85,629,378 (-)NCBIGRCm39mm39
GRCm39 Ensembl885,613,022 - 85,620,550 (-)Ensembl
GRCm38884,886,387 - 84,893,921 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,886,393 - 84,893,921 (-)EnsemblGRCm38mm10GRCm38
MGSCv37887,410,286 - 87,417,820 (-)NCBIGRCm37mm9NCBIm37
MGSCv36887,776,696 - 87,783,807 (-)NCBImm8
Celera889,185,944 - 89,193,269 (-)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.28NCBI
Gcdh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21923,263,215 - 23,269,689 (+)NCBI
Rnor_6.0 Ensembl1926,000,497 - 26,006,970 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01926,000,497 - 26,006,970 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01936,976,120 - 36,982,606 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41924,919,470 - 24,925,943 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11924,924,493 - 24,930,910 (+)NCBI
Celera1922,820,112 - 22,826,585 (+)NCBICelera
Cytogenetic Map19q11NCBI
Gcdh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541531,952,580 - 31,961,615 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541531,952,400 - 31,958,067 (+)NCBIChiLan1.0ChiLan1.0
GCDH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11913,195,241 - 13,204,253 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1913,195,241 - 13,204,223 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01912,452,779 - 12,461,757 (+)NCBIMhudiblu_PPA_v0panPan3
GCDH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12049,284,341 - 49,290,456 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2049,284,425 - 49,290,849 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2049,156,598 - 49,162,728 (-)NCBI
ROS_Cfam_1.02049,801,277 - 49,807,408 (-)NCBI
UMICH_Zoey_3.12049,012,394 - 49,018,522 (-)NCBI
UNSW_CanFamBas_1.02049,438,870 - 49,444,995 (-)NCBI
UU_Cfam_GSD_1.02049,681,416 - 49,687,548 (-)NCBI
GCDH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl266,130,625 - 66,138,868 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1266,131,154 - 66,138,963 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2266,461,407 - 66,466,086 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GCDH
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1611,572,512 - 11,588,108 (+)NCBI
ChlSab1.1 Ensembl611,572,540 - 11,588,224 (+)Ensembl
Gcdh
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624901474,836 - 479,674 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005336212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005336212   ⟹   XP_005336269
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118208,392,780 - 208,399,126 (-)NCBI
SpeTri2.0NW_0049366591,955,601 - 1,961,925 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005336269 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005336269   ⟸   XM_005336212
- UniProtKB: I3MC58 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Acyl-CoA_dh_1   Acyl-CoA_dh_M   Acyl-CoA_dh_N


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008724 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000007812 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008717 UniProtKB/TrEMBL
Gene3D-CATH 1.10.540.10 UniProtKB/TrEMBL
InterPro Acyl-CoA_DH_CS UniProtKB/TrEMBL
  Acyl-CoA_Oxase/DH_cen-dom UniProtKB/TrEMBL
  AcylCo_DH-like_C UniProtKB/TrEMBL
  AcylCo_DH/oxidase_C UniProtKB/TrEMBL
  AcylCoA_DH/ox_N UniProtKB/TrEMBL
  AcylCoA_DH/ox_N_sf UniProtKB/TrEMBL
  AcylCoA_DH/oxidase_NM_dom UniProtKB/TrEMBL
NCBI Gene Gcdh ENTREZGENE
Pfam Acyl-CoA_dh_1 UniProtKB/TrEMBL
  Acyl-CoA_dh_M UniProtKB/TrEMBL
  Acyl-CoA_dh_N UniProtKB/TrEMBL
PROSITE ACYL_COA_DH_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF47203 UniProtKB/TrEMBL
  SSF56645 UniProtKB/TrEMBL
UniProt I3MC58 ENTREZGENE, UniProtKB/TrEMBL