Col26a1 (collagen type XXVI alpha 1 chain) - Rat Genome Database

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Gene: Col26a1 (collagen type XXVI alpha 1 chain) Ictidomys tridecemlineatus
Analyze
Symbol: Col26a1
Name: collagen type XXVI alpha 1 chain (Ensembl:uncharacterized LOC101964570)
RGD ID: 12556035
Description: INVOLVED IN positive regulation of cell-substrate adhesion (ortholog); ASSOCIATED WITH genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN endoplasmic reticulum (inferred); extracellular matrix (inferred); Golgi apparatus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: collagen alpha-1(XXVI) chain; LOC101964570; uncharacterized LOC101964570
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344132,717,818 - 132,842,857 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365431,194,100 - 1,317,483 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365431,315,348 - 1,318,708 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Col26a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344132,717,818 - 132,842,857 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365431,194,100 - 1,317,483 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365431,315,348 - 1,318,708 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL26A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387101,362,388 - 101,559,024 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7101,362,875 - 101,559,024 (+)EnsemblGRCh38hg38GRCh38
GRCh377101,006,156 - 101,202,304 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367100,792,842 - 100,989,024 (+)NCBINCBI36Build 36hg18NCBI36
Build 347100,599,748 - 100,794,245NCBI
Celera796,014,234 - 96,210,348 (+)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef795,597,036 - 95,791,694 (+)NCBIHuRef
CHM1_17100,938,179 - 101,134,371 (+)NCBICHM1_1
T2T-CHM13v2.07102,672,964 - 102,878,925 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27100,364,488 - 100,560,691 (+)NCBI
Col26a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395136,770,613 - 136,912,230 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5136,770,613 - 136,912,063 (-)EnsemblGRCm39 Ensembl
GRCm385136,741,759 - 136,883,376 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5136,741,759 - 136,883,209 (-)EnsemblGRCm38mm10GRCm38
MGSCv375137,217,634 - 137,358,977 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365137,026,391 - 137,167,734 (-)NCBIMGSCv36mm8
Celera5133,756,827 - 133,899,007 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map576.03NCBI
Col26a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81225,429,362 - 25,575,205 (+)NCBIGRCr8
mRatBN7.21219,792,693 - 19,938,556 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1219,792,728 - 19,938,556 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1220,931,763 - 21,077,713 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,544,466 - 21,690,420 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01220,609,511 - 20,756,059 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01222,834,866 - 22,980,603 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1222,835,019 - 22,980,603 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01224,843,986 - 24,983,449 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41221,027,254 - 21,048,440 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1221,567,842 - 21,711,232 (+)NCBICelera
Cytogenetic Map12q12NCBI
Col26a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545615,804,725 - 15,951,219 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545615,803,342 - 15,951,349 (-)NCBIChiLan1.0ChiLan1.0
COL26A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26119,372,880 - 119,568,729 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17167,637,513 - 167,833,354 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0793,500,218 - 93,696,147 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17106,736,925 - 106,931,470 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7106,793,555 - 106,931,470 (+)Ensemblpanpan1.1panPan2
COL26A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.168,348,223 - 8,502,309 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl68,380,486 - 8,502,083 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha610,046,246 - 10,241,025 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.068,167,924 - 8,363,182 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl68,200,636 - 8,363,025 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.168,155,610 - 8,319,215 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.068,098,966 - 8,293,797 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.068,264,029 - 8,458,981 (-)NCBIUU_Cfam_GSD_1.0
COL26A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl39,003,743 - 9,158,130 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.139,003,126 - 9,164,074 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.238,559,750 - 8,703,022 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COL26A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12811,626,864 - 11,819,623 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660704,536,799 - 4,773,660 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Col26a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474015,822,883 - 15,970,706 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474015,822,883 - 15,971,110 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000029435   ⟹   ENSSTOP00000016384
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365431,194,100 - 1,317,483 (+)Ensembl
RefSeq Acc Id: XM_040278586   ⟹   XP_040134520
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344132,717,818 - 132,842,857 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040134520 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000016384.2
GenBank Protein KAG3259852 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040134520   ⟸   XM_040278586
RefSeq Acc Id: ENSSTOP00000016384   ⟸   ENSSTOT00000029435
Protein Domains
EMI


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000020628 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029435.2 UniProtKB/TrEMBL
InterPro Collagen UniProtKB/TrEMBL
  EMI_domain UniProtKB/TrEMBL
NCBI Gene Col26a1 ENTREZGENE
PANTHER COLLAGEN ALPHA-1(XXVI) CHAIN UniProtKB/TrEMBL
  EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER UniProtKB/TrEMBL
Pfam Collagen UniProtKB/TrEMBL
  EMI UniProtKB/TrEMBL
PROSITE EMI UniProtKB/TrEMBL
UniProt I3MW89_ICTTR UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 Col26a1  collagen type XXVI alpha 1 chain  LOC101964570  uncharacterized LOC101964570  Symbol and/or name change 5135510 APPROVED
2017-07-13 LOC101964570  uncharacterized LOC101964570  Col26a1  collagen type XXVI alpha 1 chain  Symbol and/or name change 5135510 APPROVED