Arhgef1 (Rho guanine nucleotide exchange factor 1)

Gene: Arhgef1 (Rho guanine nucleotide exchange factor 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Arhgef1

Name:

Rho guanine nucleotide exchange factor 1

RGD ID:

12554580

Description:

ENCODES a protein that exhibits G protein-coupled receptor binding (inferred); GTPase activator activity (inferred); guanyl-nucleotide exchange factor activity (inferred); INVOLVED IN microtubule depolymerization (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ASSOCIATED WITH Carpenter Syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

Rho guanine nucleotide exchange factor 1, transcript variant X1; Rho guanine nucleotide exchange factor 1, transcript variant X2; Rho guanine nucleotide exchange factor 1, transcript variant X3; Rho guanine nucleotide exchange factor 1, transcript variant X4

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	16,193,641 - 16,211,488 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936706	540,748 - 558,823 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936706	540,987 - 558,792 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Carpenter Syndrome 2 (ISO)

congenital hypoplastic anemia (ISO)

craniosynostosis (ISO)

Diamond-Blackfan anemia (ISO)

genetic disease (ISO)

immunodeficiency 62 (ISO)

maple syrup urine disease (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

G protein-coupled receptor signaling pathway (IEA)

microtubule depolymerization (ISO)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

membrane (IEA)

plasma membrane (IEA)

Molecular Function

G protein-coupled receptor binding (IEA)

GTPase activator activity (IEA)

guanyl-nucleotide exchange factor activity (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

eicosanoid signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Arhgef1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	16,193,641 - 16,211,488 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936706	540,748 - 558,823 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936706	540,987 - 558,792 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARHGEF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	41,883,184 - 41,930,141 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	41,883,173 - 41,930,150 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	42,387,251 - 42,434,293 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	47,079,107 - 47,103,444 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	47,080,285 - 47,103,443	NCBI
Celera	19	39,186,950 - 39,211,282 (+)	NCBI		Celera
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	38,818,551 - 38,842,545 (+)	NCBI		HuRef
CHM1_1	19	42,388,735 - 42,412,987 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	44,702,671 - 44,749,424 (+)	NCBI		T2T-CHM13v2.0

Arhgef1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	24,601,762 - 24,626,019 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	24,602,337 - 24,626,019 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	24,902,986 - 24,926,594 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	24,902,912 - 24,926,594 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	25,688,005 - 25,711,611 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	24,611,816 - 24,635,352 (+)	NCBI		MGSCv36	mm8
Celera	7	19,518,885 - 19,542,623 (+)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	13.52	NCBI

Arhgef1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	89,626,884 - 89,648,823 (+)	NCBI		GRCr8
mRatBN7.2	1	80,499,026 - 80,520,954 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	80,499,131 - 80,520,953 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	85,891,659 - 85,913,491 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	94,442,476 - 94,464,309 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	87,647,420 - 87,669,252 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	81,769,212 - 81,797,237 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	81,779,380 - 81,797,236 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	83,025,520 - 83,053,989 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	80,209,459 - 80,226,353 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	80,287,569 - 80,304,463 (+)	NCBI
Celera	1	74,946,561 - 74,968,150 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Arhgef1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955555	941,539 - 961,407 (-)	NCBI	ChiLan1.0	ChiLan1.0

ARHGEF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	47,988,151 - 48,013,022 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	49,857,135 - 49,882,019 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	38,771,343 - 38,796,174 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	47,276,407 - 47,299,663 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	47,277,420 - 47,299,663 (+)	Ensembl	panpan1.1		panPan2

ARHGEF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	112,391,670 - 112,410,160 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	111,827,451 - 111,846,482 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	113,015,057 - 113,034,087 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	113,015,059 - 113,033,980 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	112,568,393 - 112,587,492 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	112,204,579 - 112,223,608 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	113,131,063 - 113,150,095 (-)	NCBI		UU_Cfam_GSD_1.0

ARHGEF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	49,975,876 - 49,995,339 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	49,975,957 - 49,995,442 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	46,030,643 - 46,046,982 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARHGEF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	36,091,158 - 36,115,355 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	36,091,204 - 36,115,626 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	14,326,794 - 14,351,774 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arhgef1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624907	783,214 - 802,150 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624907	783,404 - 802,205 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013364200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013364201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735163	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735164	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040278827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040278828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000003545 ⟹ ENSSTOP00000003175

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936706	540,748 - 558,823 (-)	Ensembl

RefSeq Acc Id:

XM_013364200 ⟹ XP_013219654

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	16,193,644 - 16,211,488 (-)	NCBI
SpeTri2.0	NW_004936706	540,987 - 558,792 (-)	NCBI

Sequence:

show sequence

GGGAACCCGAAGTCCGCGCGCGGAGGCTTCAGTTTCGGCGGCTGCAGTGACTTCTTTTCCAACC
CAAGCAGAGCCTTGGAGATGGAAGACGTCGCCCGAGGGGTGGCTCCAGGGCCCCCGCGGCCTGG
CCTGGTGCCCGTCAGCATCATCGGGGCTGAGGATGAGGATTTCGAGAATGAGCTGGAGGCTAGC
TCAGAGGAGCAAAACAGCCAGTTCCAGAGCCTGGAGCAGGTGAAGAGGCGCCCGGCCCACCTCA
TGGCTTTCCTGCAGCATGTGGCCCTGCAGTTTGAGCCAGGACCTCTGCTCTGCTGCCTGCATGC
CGACATGCTGGGCTCCCTGGGCCCCAAGGAGACCAAGAAGGCCTTCCTCGACTTCTGCCACAGC
TTCTTGGATAAGACCGCGGTCCTACGGGTGCCAGCCCCTTCCAGCGTCACCTTTGAACTTGACC
GCACACGGCCTGACCTCCTCTCTGAGGATGTCCAGCGGCGGTTCATGCAGGAGGTGGTGCAGAA
CCAGCAGGCAACCGTGAGCAGGCAGCTGGAGGACTTCCGCTCCAAGCGGCTCATGGGCATGACG
CCCTGGGAGCAGGAGCTAGCCCAGCTGGAGGCCTGGGTTGGGCGCGACCGAGCCAGCTACGAGG
CCCGTGAGCGGCATGTGGCCGAGCGACTGCTGACCCACCTGGAGGAGATGCAGCACACCATCTC
TAACGACGAAGAGAAGAGTGCTGCTGTGGTGACTGCCATCAGCCTGTACATGCGCCACCTTGGG
GTGCGGACCAAGAGCGGGGACAAGAAGTCAGGGAGGAACTTCTTCCGGAAAAAGATGATGGGGA
ACAAGCGGTCAGATGAGCCTCCTAAGACCAAGAAAGGACTGAGCAGTATCCTGGATGCTGCTCG
CTGGAACCGGGGAGAGCCCCAGGCTCCAGATTTTCGACACCTCAAAAGCGAGGTTGATGCTGAA
AAGCTAGGTCCTACAGACCGGAAGGGAGCCCTGGGAATGCCTTCTCGGGACCGGAATGTTGGGA
CTTCTGGACAGGACACCCCTGGAGTCCCTCTGCAACTTTTGTCCGGAGACAGCCCAGACCGGGA
ACCAGGCGTGGATTCCCCCCTGGACCTGGGGGACCCACCCCCACAGGGCACAGTGAATTTGGAG
CCCCCGGCGCCCCCAGAGAGCACAGAGGAGGGTGCTGAGACGGAGAGCCCTGAGCCTGGAGATG
AAGGGGAGCCAGGGCGGTCAGGACTAGAGCTGGAACCAGAAGAGCCTCCCGGCTGGCGGGAGCT
TGTCCCCCCGGACATCCTCCTCAACCTGCCCAAAAGCCAGGTGAAGCGGCAGGAGGTCATCAGC
GAGCTCCTGGTGACAGAGGCAGCCCATGTGCGCATGCTGCGGGTGTTGCATGACCTCTTCTACC
AGCCCATGGCCGATGGGGGCTTCTTCCCGCTGGAGGAACTGCAGAACATCTTCCCCAGCCTGGA
TGAGCTCATCGAGGTGCACTCCCTGTTCCTCGATCGCCTCATGAAACGGAGACAGGAAAGTGGC
TACCTCATTGAAGAGATTGGAGACGTGCTGTTGGCCAGGTTTGATGGTGCCGAGGGCTCCTGGT
TCCAGAAAATCTCCTCCCGCTTCTGCAGCCGCCAGTCATTTGCTTTAGAGCAGCTCAAGGCCAA
ACAGCGCAAGGAGCCCCGATTCTGTACCTTCGTGCAGGATGCTGAGAGCCGCCCACGGTGCCGC
CGCCTGCAACTGAAGGACATGATCCCCACCGAGATGCAGCGGCTGACTAAGTACCCGCTGCTCC
TGCAGAGCATCGAGCAGAACACAGAAGAGCCTACGGAACGGGAGAAAGTGGAGCTGGCAGCCGA
GTGCTGCCGGGAGATTCTGCACCATGTCAACCAAGCCGTGCGTGACATGGAGGACTTGCTGAGG
CTCAAAGATTACCAGCGCCGCCTGGACTTGTCCCACCTGCGGCAGAGCAGCGACCCCATGCTGA
GCGAGTTCAAGAACCTGGACATCACCAAGAAGAAGCTGGTGCACGAGGGTCCATTGACGTGGCG
GGTGACCAAGGACAAAGCTGTGGAGGTCCACGTGCTGCTGCTGGACGACCTACTACTACTGCTC
CAGCGCCAGGATGAGAGGCTGCTGCTCAAGTCACACAGCCGGACGCTCACGCCCACGCCTGATG
GCAAGACCATGCTGCGGCCTGTGCTGCGGCTCACCTCCGCCATGACCCGCGAGGTGGCCACCGA
TCACAAAGCCTTCTACGTCATTTTTACCTGGGACCAAGAGGCCCAAATATATGAGCTGGTGGCA
CAGACTGTGTCAGAGCGGAAGAACTGGTGTGCCCTCATTACTGAGACTGCTGGATCCCTGAAGG
TCCCCGCCCCTGCCTCCCGCCCTAAACCCCGACCCAGCCCAAGCAGCACCCGGGAACCCCTGCT
CAGCAGCTCTGAGAATGGCAACTGCAGCCGAGAGATGCCTCCAGCTGACGCCCGGACTGAGAAA
ATCCTCAGTGACCTCCTGCCCTTCTGCCGACCAGGCCCTGAGGGCCAGCTTGCTGCCACAGCCC
TTCAGAAAGTGCTGTCCCTGAAGCAGCTCCTGTTTCCTGTGGAGGAAGACAACAACGGGGCTGG
GCCTCCTCGAAACGGGGATGAGGTGCCAGGTGGCAGCCCTCTGGGCCCAGCGCAGACCCAGGAA
ATTCAAGAGAACCTGCTCAGCCTGGAAGAGGCCATAAAGCAGCTAGAGGAATTGGAGGAGGAAC
TGTGCCGCCTGCGACCTCTCCTGTCTCAGCTCGGGGGGAATGCTGTCCCCCAGCCTGGCTGCAC
CTGAGGCCCCTGCCCAGGCAGGCCTTTCGCAAGAAGGAGAGAATGGGGGAGAGGACTGAGGGGC
CCACCCCACAGCTGCTGCAGCGTCTCACACCCCAAGGGCCTGAGGAGAGGGAGCGGGCTGCCAG
CCATGCCTGGGAGGGGCCGGCTGGGGTCCCTGTCTCCCCACCGGCCTCAGCCTTCTCTCCCTCC
TGCCTTGTCGGGGGACTCAGGGCTTCATTCTGGGGGCACCACCATGACCCCCACCACTTCCCAG
GCCATCTCAGTATTGCCTGTGGGGGCTGACCCCCCCATTCCCCACCCCTAAGTGCCTTTGCTCT
GTTTTTATATCCTGAATTGGAGGTTTATTTTTTAATATATATTATCTAAGGAGA

hide sequence

RefSeq Acc Id:

XM_013364201 ⟹ XP_013219655

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	16,193,641 - 16,204,677 (-)	NCBI
SpeTri2.0	NW_004936706	540,991 - 552,027 (-)	NCBI

Sequence:

show sequence

GGCCGGTGGGCCACGCGCTCCTCAGCCCCCGTTTGCAGGCTCCCCTCAGCCCTAGGGCTTGTTT
CCTAGCAGGTGGGCTGCTCCCCTCTCTGGCCTTTTCATTCATCCTGGCTCTGGATCTTCCCTTC
TTGGCTTTGGGTCCCTTTGCAGTTTCTGGTCTTGTCCATGATCTTGTGCTCAGCCCTGTCTAGG
CAACTCCCATCTGCCTGGAAGAGAGCCTCCCTTCTCCCGGGTGGTGCTTCAGCAGTTGCCCTTC
TTACTCCAGAGAGCACGAGCAGCCTGGAGGCACACCATCTCTAACGACGAAGAGAAGAGTGCTG
CTGTGGTGACTGCCATCAGCCTGTACATGCGCCACCTTGGGGTGCGGACCAAGAGCGGGGACAA
GAAGTCAGGGAGGAACTTCTTCCGGAAAAAGATGATGGGGAACAAGCGGTCAGATGAGCCTCCT
AAGACCAAGAAAGGACTGAGCAGTATCCTGGATGCTGCTCGCTGGAACCGGGGAGAGCCCCAGG
CTCCAGATTTTCGACACCTCAAAAGCGAGGTTGATGCTGAAAAGCTAGGTCCTACAGACCGGAA
GGGAGCCCTGGGAATGCCTTCTCGGGACCGGAATGTTGGGACTTCTGGACAGGACACCCCTGGA
GTCCCTCTGCAACTTTTGTCCGGAGACAGCCCAGACCGGGAACCAGGCGTGGATTCCCCCCTGG
ACCTGGGGGACCCACCCCCACAGGGCACAGTGAATTTGGAGCCCCCGGCGCCCCCAGAGAGCAC
AGAGGAGGGTGCTGAGACGGAGAGAAGGTGGAAGAGGCTGTCAGGGCGTCTGGGGCGCTCAGAG
AGCCTGCGGGTGAGCGACCGCCGCCGGCCTTCCCGGGGCAGCCTCGGGGCTAAGGGCCGGGGTG
GGGGCCGCTCCCGGAGCGACGTGGACATGGACCCCAGCTCCGCCACGGCCGTGCTTGGCCCTGC
CCGACGAGCCACCCCTGAGCCTGGAGATGAAGGGGAGCCAGGGCGGTCAGGACTAGAGCTGGAA
CCAGAAGAGCCTCCCGGCTGGCGGGAGCTTGTCCCCCCGGACATCCTCCTCAACCTGCCCAAAA
GCCAGGTGAAGCGGCAGGAGGTCATCAGCGAGCTCCTGGTGACAGAGGCAGCCCATGTGCGCAT
GCTGCGGGTGTTGCATGACCTCTTCTACCAGCCCATGGCCGATGGGGGCTTCTTCCCGCTGGAG
GAACTGCAGAACATCTTCCCCAGCCTGGATGAGCTCATCGAGGTGCACTCCCTGTTCCTCGATC
GCCTCATGAAACGGAGACAGGAAAGTGGCTACCTCATTGAAGAGATTGGAGACGTGCTGTTGGC
CAGGTTTGATGGTGCCGAGGGCTCCTGGTTCCAGAAAATCTCCTCCCGCTTCTGCAGCCGCCAG
TCATTTGCTTTAGAGCAGCTCAAGGCCAAACAGCGCAAGGAGCCCCGATTCTGTACCTTCGTGC
AGGATGCTGAGAGCCGCCCACGGTGCCGCCGCCTGCAACTGAAGGACATGATCCCCACCGAGAT
GCAGCGGCTGACTAAGTACCCGCTGCTCCTGCAGAGCATCGAGCAGAACACAGAAGAGCCTACG
GAACGGGAGAAAGTGGAGCTGGCAGCCGAGTGCTGCCGGGAGATTCTGCACCATGTCAACCAAG
CCGTGCGTGACATGGAGGACTTGCTGAGGCTCAAAGATTACCAGCGCCGCCTGGACTTGTCCCA
CCTGCGGCAGAGCAGCGACCCCATGCTGAGCGAGTTCAAGAACCTGGACATCACCAAGAAGAAG
CTGGTGCACGAGGGTCCATTGACGTGGCGGGTGACCAAGGACAAAGCTGTGGAGGTCCACGTGC
TGCTGCTGGACGACCTACTACTACTGCTCCAGCGCCAGGATGAGAGGCTGCTGCTCAAGTCACA
CAGCCGGACGCTCACGCCCACGCCTGATGGCAAGACCATGCTGCGGCCTGTGCTGCGGCTCACC
TCCGCCATGACCCGCGAGGTGGCCACCGATCACAAAGCCTTCTACGTCATTTTTACCTGGGACC
AAGAGGCCCAAATATATGAGCTGGTGGCACAGACTGTGTCAGAGCGGAAGAACTGGTGTGCCCT
CATTACTGAGACTGCTGGATCCCTGAAGGTCCCCGCCCCTGCCTCCCGCCCTAAACCCCGACCC
AGCCCAAGCAGCACCCGGGAACCCCTGCTCAGCAGCTCTGAGAATGGCAACTGCAGCCGAGAGA
TGCCTCCAGCTGACGCCCGGACTGAGAAAATCCTCAGTGACCTCCTGCCCTTCTGCCGACCAGG
CCCTGAGGGCCAGCTTGCTGCCACAGCCCTTCAGAAAGTGCTGTCCCTGAAGCAGCTCCTGTTT
CCTGTGGAGGAAGACAACAACGGGGCTGGGCCTCCTCGAAACGGGGATGAGGTGCCAGGTGGCA
GCCCTCTGGGCCCAGCGCAGACCCAGGAAATTCAAGAGAACCTGCTCAGCCTGGAAGAGGCCAT
AAAGCAGCTAGAGGAATTGGAGGAGGAACTGTGCCGCCTGCGACCTCTCCTGTCTCAGCTCGGG
GGGAATGCTGTCCCCCAGCCTGGCTGCACCTGAGGCCCCTGCCCAGGCAGGCCTTTCGCAAGAA
GGAGAGAATGGGGGAGAGGACTGAGGGGCCCACCCCACAGCTGCTGCAGCGTCTCACACCCCAA
GGGCCTGAGGAGAGGGAGCGGGCTGCCAGCCATGCCTGGGAGGGGCCGGCTGGGGTCCCTGTCT
CCCCACCGGCCTCAGCCTTCTCTCCCTCCTGCCTTGTCGGGGGACTCAGGGCTTCATTCTGGGG
GCACCACCATGACCCCCACCACTTCCCAGGCCATCTCAGTATTGCCTGTGGGGGCTGACCCCCC
CATTCCCCACCCCTAAGTGCCTTTGCTCTGTTTTTATATCCTGAATTGGAGGTTTATTTTTTAA
TATATATTATCTAAG

hide sequence

RefSeq Acc Id:

XM_021735163 ⟹ XP_021590838

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	16,193,641 - 16,211,488 (-)	NCBI
SpeTri2.0	NW_004936706	540,991 - 558,792 (-)	NCBI

Sequence:

show sequence

GGGAACCCGAAGTCCGCGCGCGGAGGCTTCAGTTTCGGCGGCTGCAGTGACTTCTTTTCCAACC
CAAGCAGAGCCTTGGAGATGGAAGACGTCGCCCGAGGGGTGGCTCCAGGGCCCCCGCGGCCTGG
CCTGGTGCCCGTCAGCATCATCGGGGCTGAGGATGAGGATTTCGAGAATGAGCTGGAGGCTAGC
TCAGAGGAGCAAAACAGCCAGTTCCAGAGCCTGGAGCAGGTGAAGAGGCGCCCGGCCCACCTCA
TGGCTTTCCTGCAGCATGTGGCCCTGCAGTTTGAGCCAGGACCTCTGCTCTGCTGCCTGCATGC
CGACATGCTGGGCTCCCTGGGCCCCAAGGAGACCAAGAAGGCCTTCCTCGACTTCTGCCACAGC
TTCTTGGATAAGACCGCGGTCCTACGGGTGCCAGCCCCTTCCAGCGTCACCTTTGAACTTGACC
GCACACGGCCTGACCTCCTCTCTGAGGATGTCCAGCGGCGGTTCATGCAGGAGGTGGTGCAGAA
CCAGCAGGCAACCGTGAGCAGGCAGCTGGAGGACTTCCGCTCCAAGCGGCTCATGGGCATGACG
CCCTGGGAGCAGGAGCTAGCCCAGCTGGAGGCCTGGGTTGGGCGCGACCGAGCCAGCTACGAGG
CCCGTGAGCGGCATGTGGCCGAGCGACTGCTGACCCACCTGGAGGAGATGCAGCACACCATCTC
TAACGACGAAGAGAAGAGTGCTGCTGTGGTGACTGCCATCAGCCTGTACATGCGCCACCTTGGG
GTGCGGACCAAGAGCGGGGACAAGAAGTCAGGGAGGAACTTCTTCCGGAAAAAGATGATGGGGA
ACAAGCGGTCAGATGAGCCTCCTAAGACCAAGAAAGGACTGAGCAGTATCCTGGATGCTGCTCG
CTGGAACCGGGGAGAGCCCCAGGCTCCAGATTTTCGACACCTCAAAAGCGAGGTTGATGCTGAA
AAGCTAGGTCCTACAGACCGGAAGGGAGCCCTGGGAATGCCTTCTCGGGACCGGAATGTTGGGA
CTTCTGGACAGGACACCCCTGGAGTCCCTCTGCAACTTTTGTCCGGAGACAGCCCAGACCGGGA
ACCAGGCGTGGATTCCCCCCTGGACCTGGGGGACCCACCCCCACAGGGCACAGTGAATTTGGAG
CCCCCGGCGCCCCCAGAGAGCACAGAGGAGGGTGCTGAGACGGAGAGAAGGTGGAAGAGGCTGT
CAGGGCGTCTGGGGCGCTCAGAGAGCCTGCGGGTGAGCGACCGCCGCCGGCCTTCCCGGGGCAG
CCTCGGGGCTAAGGGCCGGGGTGGGGGCCGCTCCCGGAGCGACGTGGACATGGACCCCAGCTCC
GCCACGGCCGTGCTTGGCCCTGCCCGACGAGCCACCCCTGAGCCTGGAGATGAAGGGGAGCCAG
GGCGGTCAGGACTAGAGCTGGAACCAGAAGAGCCTCCCGGCTGGCGGGAGCTTGTCCCCCCGGA
CATCCTCCTCAACCTGCCCAAAAGCCAGGTGAAGCGGCAGGAGGTCATCAGCGAGCTCCTGGTG
ACAGAGGCAGCCCATGTGCGCATGCTGCGGGTGTTGCATGACCTCTTCTACCAGCCCATGGCCG
ATGGGGGCTTCTTCCCGCTGGAGGAACTGCAGAACATCTTCCCCAGCCTGGATGAGCTCATCGA
GGTGCACTCCCTGTTCCTCGATCGCCTCATGAAACGGAGACAGGAAAGTGGCTACCTCATTGAA
GAGATTGGAGACGTGCTGTTGGCCAGGTTTGATGGTGCCGAGGGCTCCTGGTTCCAGAAAATCT
CCTCCCGCTTCTGCAGCCGCCAGTCATTTGCTTTAGAGCAGCTCAAGGCCAAACAGCGCAAGGA
GCCCCGATTCTGTACCTTCGTGCAGGATGCTGAGAGCCGCCCACGGTGCCGCCGCCTGCAACTG
AAGGACATGATCCCCACCGAGATGCAGCGGCTGACTAAGTACCCGCTGCTCCTGCAGAGCATCG
AGCAGAACACAGAAGAGCCTACGGAACGGGAGAAAGTGGAGCTGGCAGCCGAGTGCTGCCGGGA
GATTCTGCACCATGTCAACCAAGCCGTGCGTGACATGGAGGACTTGCTGAGGCTCAAAGATTAC
CAGCGCCGCCTGGACTTGTCCCACCTGCGGCAGAGCAGCGACCCCATGCTGAGCGAGTTCAAGA
ACCTGGACATCACCAAGAAGAAGCTGGTGCACGAGGGTCCATTGACGTGGCGGGTGACCAAGGA
CAAAGCTGTGGAGGTCCACGTGCTGCTGCTGGACGACCTACTACTACTGCTCCAGCGCCAGGAT
GAGAGGCTGCTGCTCAAGTCACACAGCCGGACGCTCACGCCCACGCCTGATGGCAAGACCATGC
TGCGGCCTGTGCTGCGGCTCACCTCCGCCATGACCCGCGAGGTGGCCACCGATCACAAAGCCTT
CTACGTCATTTTTACCTGGGACCAAGAGGCCCAAATATATGAGCTGGTGGCACAGACTGTGTCA
GAGCGGAAGAACTGGTGTGCCCTCATTACTGAGACTGCTGGATCCCTGAAGGTCCCCGCCCCTG
CCTCCCGCCCTAAACCCCGACCCAGCCCAAGCAGCACCCGGGAACCCCTGCTCAGCAGCTCTGA
GAATGGCAACTGCAGCCGAGAGATGCCTCCAGCTGACGCCCGGACTGAGAAAATCCTCAGTGAC
CTCCTGCCCTTCTGCCGACCAGGCCCTGAGGGCCAGCTTGCTGCCACAGCCCTTCAGAAAGTGC
TGTCCCTGAAGCAGCTCCTGTTTCCTGTGGAGGAAGACAACAACGGGGCTGGGCCTCCTCGAAA
CGGGGATGAGGTGCCAGGTGGCAGCCCTCTGGGCCCAGCGCAGACCCAGGAAATTCAAGAGAAC
CTGCTCAGCCTGGAAGAGGCCATAAAGCAGCTAGAGGAATTGGAGGAGGAACTGTGCCGCCTGC
GACCTCTCCTGTCTCAGCTCGGGGGGAATGCTGTCCCCCAGCCTGGCTGCACCTGAGGCCCCTG
CCCAGGCAGGCCTTTCGCAAGAAGGAGAGAATGGGGGAGAGGACTGAGGGGCCCACCCCACAGC
TGCTGCAGCGTCTCACACCCCAAGGGCCTGAGGAGAGGGAGCGGGCTGCCAGCCATGCCTGGGA
GGGGCCGGCTGGGGTCCCTGTCTCCCCACCGGCCTCAGCCTTCTCTCCCTCCTGCCTTGTCGGG
GGACTCAGGGCTTCATTCTGGGGGCACCACCATGACCCCCACCACTTCCCAGGCCATCTCAGTA
TTGCCTGTGGGGGCTGACCCCCCCATTCCCCACCCCTAAGTGCCTTTGCTCTGTTTTTATATCC
TGAATTGGAGGTTTATTTTTTAATATATATTATCTAAG

hide sequence

RefSeq Acc Id:

XM_021735164 ⟹ XP_021590839

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	16,193,641 - 16,211,488 (-)	NCBI
SpeTri2.0	NW_004936706	541,032 - 558,792 (-)	NCBI

Sequence:

show sequence

GGGAACCCGAAGTCCGCGCGCGGAGGCTTCAGTTTCGGCGGCTGCAGTGACTTCTTTTCCAACC
CAAGCAGAGCCTTGGAGATGGAAGACGTCGCCCGAGGGGTGGCTCCAGGGCCCCCGCGGCCTGG
CCTGGTGCCCGTCAGCATCATCGGGGCTGAGGATGAGGATTTCGAGAATGAGCTGGAGGCTAGC
TCAGAGGAGCAAAACAGCCAGTTCCAGAGCCTGGAGCAGGTGAAGAGGCGCCCGGCCCACCTCA
TGGCTTTCCTGCAGCATGTGGCCCTGCAGTTTGAGCCAGGACCTCTGCTCTGCTGCCTGCATGC
CGACATGCTGGGCTCCCTGGGCCCCAAGGAGACCAAGAAGGCCTTCCTCGACTTCTGCCACAGC
TTCTTGGATAAGACCGCGGTCCTACGGGTGCCAGCCCCTTCCAGCGTCACCTTTGAACTTGACC
GCACACGGCCTGACCTCCTCTCTGAGGATGTCCAGCGGCGGTTCATGCAGGAGGTGGTGCAGAA
CCAGCAGGCAACCGTGAGCAGGCAGCTGGAGGACTTCCGCTCCAAGCGGCTCATGGGCATGACG
CCCTGGGAGCAGGAGCTAGCCCAGCTGGAGGCCTGGGTTGGGCGCGACCGAGCCAGCTACGAGG
CCCGTGAGCGGCATGTGGCCGAGCGACTGCTGACCCACCTGGAGGAGATGCAGCACACCATCTC
TAACGACGAAGAGAAGAGTGCTGCTGTGGTGACTGCCATCAGCCTGTACATGCGCCACCTTGGG
GTGCGGACCAAGAGCGGGGACAAGAAGTCAGGGAGGAACTTCTTCCGGAAAAAGATGATGGGGA
ACAAGCGGTCAGATGAGCCTCCTAAGACCAAGAAAGGACTGAGCAGTATCCTGGATGCTGCTCG
CTGGAACCGGGGAGAGCCCCAGGCTCCAGATTTTCGACACCTCAAAAGCGAGGTTGATGCTGAA
AAGCTAGGTCCTACAGACCGGAAGGGAGCCCTGGGAATGCCTTCTCGGGACCGGAATGTTGGGA
CTTCTGGACAGGACACCCCTGGAGTCCCTCTGCAACTTTTGTCCGGAGACAGCCCAGACCGGGA
ACCAGGCGTGGATTCCCCCCTGGACCTGGGGGACCCACCCCCACAGGGCACAGTGAATTTGGAG
CCCCCGGCGCCCCCAGAGAGCACAGAGGAGGGTGCTGAGACGGAGAGAAGGTGGAAGAGGCTGT
CAGGGCGTCTGGGGCGCTCAGAGAGCCTGCGGGTGAGCGACCGCCGCCGGCCTTCCCGGGGCAG
CCTCGGGGCTAAGGGCCGGGGTGGGGGCCGCTCCCGGAGCGACGTGGACATGGACCCCAGCTCC
GCCACGGCCGTGCTTGGCCCTGCCCGACGAGCCACCCCTGAGCCTGGAGATGAAGGGGAGCCAG
GGCGGTCAGGACTAGAGCTGGAACCAGAAGAGCCTCCCGGCTGGCGGGAGCTTGTCCCCCCGGA
CATCCTCCTCAACCTGCCCAAAAGCCAGGTGAAGCGGCAGGAGGTCATCAGCGAGCTCCTGGTG
ACAGAGGCAGCCCATGTGCGCATGCTGCGGGTGTTGCATGACCTCTTCTACCAGCCCATGGCCG
ATGGGGGCTTCTTCCCGCTGGAGGAACTGCAGAACATCTTCCCCAGCCTGGATGAGCTCATCGA
GGTGCACTCCCTGTTCCTCGATCGCCTCATGAAACGGAGACAGGAAAGTGGCTACCTCATTGAA
GAGATTGGAGACGTGCTGTTGGCCAGGTTTGATGGTGCCGAGGGCTCCTGGTTCCAGAAAATCT
CCTCCCGCTTCTGCAGCCGCCAGTCATTTGCTTTAGAGCAGCTCAAGGCCAAACAGCGCAAGGA
GCCCCGATTCTGTACCTTCGTGCAGGATGCTGAGAGCCGCCCACGGTGCCGCCGCCTGCAACTG
AAGGACATGATCCCCACCGAGATGCAGCGGCTGACTAAGTACCCGCTGCTCCTGCAGAGCATCG
AGCAGAACACAGAAGAGCCTACGGAACGGGAGAAAGTGGAGCTGGCAGCCGAGTGCTGCCGGGA
GATTCTGCACCATGTCAACCAAGCCGTGCGTGACATGGAGGACTTGCTGAGGCTCAAAGATTAC
CAGCGCCGCCTGGACTTGTCCCACCTGCGGCAGAGCAGCGACCCCATGCTGAGCGAGTTCAAGA
ACCTGGACATCACCAAGAAGAAGCTGGTGCACGAGGGTCCATTGACGTGGCGGGTGACCAAGGA
CAAAGCTGTGGAGGTCCACGTGCTGCTGCTGGACGACCTACTACTACTGCTCCAGCGCCAGGAT
GAGAGGCTGCTGCTCAAGTCACACAGCCGGACGCTCACGCCCACGCCTGATGGCAAGACCATGC
TGCGGCCTGTGCTGCGGCTCACCTCCGCCATGACCCGCGAGGTGGCCACCGATCACAAAGCCTT
CTACGTCATTTTTACCTGGGACCAAGAGGCCCAAATATATGAGCTGGTGGCACAGACTGTGTCA
GAGCGGAAGAACTGGTGTGCCCTCATTACTGAGACTGCTGGATCCCTGAAGGTCCCCGCCCCTG
CCTCCCGCCCTAAACCCCGACCCAGCCCAAGCAGCACCCGGGAACCCCTGCTCAGCAGCTCTGA
GAATGGCAACTGCAGCCGAGAGATGCCTCCAGCTGACGCCCGGACTGAGAAAATCCTCAGTGAC
CTCCTGCCCTTCTGCCGACCAGGCCCTGAGGGCCAGCTTGCTGCCACAGCCCTTCAGAAAGTGC
TGTCCCTGAAGCAGCTCCTGTTTCCTGTGGAGGAAGACAACAACGGGGCTGGGCCTCCTCGAAA
CGGGGATGAGGTGCCAGGTGGCAGCCCTCTGGGCCCAGCGCAGACCCAGGAAATTCAAGAGAAC
CTGCTCAGCCTGGAAGAGGCCATAAAGCAGCTAGAGGAATTGGAGGAGGAACTGTGCCGCCTGC
GACCTCTCCTGTCTCAGCTCGGGGGGAATGCTGTCCCCCAGCCTGGCTGCACCTGAGGCCCCTG
CCCAGGCCTTTCGCAAGAAGGAGAGAATGGGGGAGAGGACTGAGGGGCCCACCCCACAGCTGCT
GCAGCGTCTCACACCCCAAGGGCCTGAGGAGAGGGAGCGGGCTGCCAGCCATGCCTGGGAGGGG
CCGGCTGGGGTCCCTGTCTCCCCACCGGCCTCAGCCTTCTCTCCCTCCTGCCTTGTCGGGGGAC
TCAGGGCTTCATTCTGGGGGCACCACCATGACCCCCACCACTTCCCAGGCCATCTCAGTATTGC
CTGTGGGGGCTGACCCCCCCATTCCCCACCCCTAAGTGCCTTTGCTCTGTTTTTATA

hide sequence

RefSeq Acc Id:

XM_040278827 ⟹ XP_040134761

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	16,193,641 - 16,208,355 (-)	NCBI

RefSeq Acc Id:

XM_040278828 ⟹ XP_040134762

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	16,194,573 - 16,211,488 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_013219654	(Get FASTA)	NCBI Sequence Viewer
	XP_013219655	(Get FASTA)	NCBI Sequence Viewer
	XP_021590838	(Get FASTA)	NCBI Sequence Viewer
	XP_021590839	(Get FASTA)	NCBI Sequence Viewer
	XP_040134761	(Get FASTA)	NCBI Sequence Viewer
	XP_040134762	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000003175.3
GenBank Protein	KAG3256168	(Get FASTA)	NCBI Sequence Viewer
	KAG3256169	(Get FASTA)	NCBI Sequence Viewer
	KAG3256170	(Get FASTA)	NCBI Sequence Viewer
	KAG3256171	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013219654 ⟸ XM_013364200

- Peptide Label:

isoform X4

- Sequence:

show sequence

MEDVARGVAPGPPRPGLVPVSIIGAEDEDFENELEASSEEQNSQFQSLEQVKRRPAHLMAFLQH
VALQFEPGPLLCCLHADMLGSLGPKETKKAFLDFCHSFLDKTAVLRVPAPSSVTFELDRTRPDL
LSEDVQRRFMQEVVQNQQATVSRQLEDFRSKRLMGMTPWEQELAQLEAWVGRDRASYEARERHV
AERLLTHLEEMQHTISNDEEKSAAVVTAISLYMRHLGVRTKSGDKKSGRNFFRKKMMGNKRSDE
PPKTKKGLSSILDAARWNRGEPQAPDFRHLKSEVDAEKLGPTDRKGALGMPSRDRNVGTSGQDT
PGVPLQLLSGDSPDREPGVDSPLDLGDPPPQGTVNLEPPAPPESTEEGAETESPEPGDEGEPGR
SGLELEPEEPPGWRELVPPDILLNLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFYQPMADG
GFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISS
RFCSRQSFALEQLKAKQRKEPRFCTFVQDAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIEQ
NTEEPTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNL
DITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLR
PVLRLTSAMTREVATDHKAFYVIFTWDQEAQIYELVAQTVSERKNWCALITETAGSLKVPAPAS
RPKPRPSPSSTREPLLSSSENGNCSREMPPADARTEKILSDLLPFCRPGPEGQLAATALQKVLS
LKQLLFPVEEDNNGAGPPRNGDEVPGGSPLGPAQTQEIQENLLSLEEAIKQLEELEEELCRLRP
LLSQLGGNAVPQPGCT

hide sequence

RefSeq Acc Id:

XP_013219655 ⟸ XM_013364201

- Peptide Label:

isoform X5

- Sequence:

show sequence

MRHLGVRTKSGDKKSGRNFFRKKMMGNKRSDEPPKTKKGLSSILDAARWNRGEPQAPDFRHLKS
EVDAEKLGPTDRKGALGMPSRDRNVGTSGQDTPGVPLQLLSGDSPDREPGVDSPLDLGDPPPQG
TVNLEPPAPPESTEEGAETERRWKRLSGRLGRSESLRVSDRRRPSRGSLGAKGRGGGRSRSDVD
MDPSSATAVLGPARRATPEPGDEGEPGRSGLELEPEEPPGWRELVPPDILLNLPKSQVKRQEVI
SELLVTEAAHVRMLRVLHDLFYQPMADGGFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQES
GYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKEPRFCTFVQDAESRPRC
RRLQLKDMIPTEMQRLTKYPLLLQSIEQNTEEPTEREKVELAAECCREILHHVNQAVRDMEDLL
RLKDYQRRLDLSHLRQSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLL
LQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVIFTWDQEAQIYELV
AQTVSERKNWCALITETAGSLKVPAPASRPKPRPSPSSTREPLLSSSENGNCSREMPPADARTE
KILSDLLPFCRPGPEGQLAATALQKVLSLKQLLFPVEEDNNGAGPPRNGDEVPGGSPLGPAQTQ
EIQENLLSLEEAIKQLEELEEELCRLRPLLSQLGGNAVPQPGCT

hide sequence

RefSeq Acc Id:	XP_021590838 ⟸ XM_021735163
- Peptide Label:	isoform X1
- UniProtKB:	I3M2H1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEDVARGVAPGPPRPGLVPVSIIGAEDEDFENELEASSEEQNSQFQSLEQVKRRPAHLMAFLQH VALQFEPGPLLCCLHADMLGSLGPKETKKAFLDFCHSFLDKTAVLRVPAPSSVTFELDRTRPDL LSEDVQRRFMQEVVQNQQATVSRQLEDFRSKRLMGMTPWEQELAQLEAWVGRDRASYEARERHV AERLLTHLEEMQHTISNDEEKSAAVVTAISLYMRHLGVRTKSGDKKSGRNFFRKKMMGNKRSDE PPKTKKGLSSILDAARWNRGEPQAPDFRHLKSEVDAEKLGPTDRKGALGMPSRDRNVGTSGQDT PGVPLQLLSGDSPDREPGVDSPLDLGDPPPQGTVNLEPPAPPESTEEGAETERRWKRLSGRLGR SESLRVSDRRRPSRGSLGAKGRGGGRSRSDVDMDPSSATAVLGPARRATPEPGDEGEPGRSGLE LEPEEPPGWRELVPPDILLNLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFYQPMADGGFFP LEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCS RQSFALEQLKAKQRKEPRFCTFVQDAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIEQNTEE PTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDITK KKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLR LTSAMTREVATDHKAFYVIFTWDQEAQIYELVAQTVSERKNWCALITETAGSLKVPAPASRPKP RPSPSSTREPLLSSSENGNCSREMPPADARTEKILSDLLPFCRPGPEGQLAATALQKVLSLKQL LFPVEEDNNGAGPPRNGDEVPGGSPLGPAQTQEIQENLLSLEEAIKQLEELEEELCRLRPLLSQ LGGNAVPQPGCT hide sequence

RefSeq Acc Id:	XP_021590839 ⟸ XM_021735164
- Peptide Label:	isoform X1
- UniProtKB:	I3M2H1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEDVARGVAPGPPRPGLVPVSIIGAEDEDFENELEASSEEQNSQFQSLEQVKRRPAHLMAFLQH VALQFEPGPLLCCLHADMLGSLGPKETKKAFLDFCHSFLDKTAVLRVPAPSSVTFELDRTRPDL LSEDVQRRFMQEVVQNQQATVSRQLEDFRSKRLMGMTPWEQELAQLEAWVGRDRASYEARERHV AERLLTHLEEMQHTISNDEEKSAAVVTAISLYMRHLGVRTKSGDKKSGRNFFRKKMMGNKRSDE PPKTKKGLSSILDAARWNRGEPQAPDFRHLKSEVDAEKLGPTDRKGALGMPSRDRNVGTSGQDT PGVPLQLLSGDSPDREPGVDSPLDLGDPPPQGTVNLEPPAPPESTEEGAETERRWKRLSGRLGR SESLRVSDRRRPSRGSLGAKGRGGGRSRSDVDMDPSSATAVLGPARRATPEPGDEGEPGRSGLE LEPEEPPGWRELVPPDILLNLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFYQPMADGGFFP LEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCS RQSFALEQLKAKQRKEPRFCTFVQDAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIEQNTEE PTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDITK KKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLR LTSAMTREVATDHKAFYVIFTWDQEAQIYELVAQTVSERKNWCALITETAGSLKVPAPASRPKP RPSPSSTREPLLSSSENGNCSREMPPADARTEKILSDLLPFCRPGPEGQLAATALQKVLSLKQL LFPVEEDNNGAGPPRNGDEVPGGSPLGPAQTQEIQENLLSLEEAIKQLEELEEELCRLRPLLSQ LGGNAVPQPGCT hide sequence

RefSeq Acc Id:	XP_040134761 ⟸ XM_040278827
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040134762 ⟸ XM_040278828
- Peptide Label:	isoform X3

RefSeq Acc Id:

ENSSTOP00000003175 ⟸ ENSSTOT00000003545

Protein Domains

DH PH

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000003526	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000003545.3	UniProtKB/TrEMBL
Gene3D-CATH	1.10.167.10	UniProtKB/TrEMBL
	1.20.900.10	UniProtKB/TrEMBL
	2.30.29.30	UniProtKB/TrEMBL
InterPro	DBL_dom_sf	UniProtKB/TrEMBL
	DH-domain	UniProtKB/TrEMBL
	p115RhoGEF_RGS	UniProtKB/TrEMBL
	PH-like_dom_sf	UniProtKB/TrEMBL
	PH_16	UniProtKB/TrEMBL
	PH_domain	UniProtKB/TrEMBL
	RGS-like_dom	UniProtKB/TrEMBL
	RGS_sf	UniProtKB/TrEMBL
	RGS_subdomain_2	UniProtKB/TrEMBL
NCBI Gene	Arhgef1	ENTREZGENE
PANTHER	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 1	UniProtKB/TrEMBL
	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 2, ISOFORM D	UniProtKB/TrEMBL
Pfam	PH_16	UniProtKB/TrEMBL
	RGS-like	UniProtKB/TrEMBL
	RhoGEF	UniProtKB/TrEMBL
PROSITE	DH_2	UniProtKB/TrEMBL
	PH_DOMAIN	UniProtKB/TrEMBL
SMART	RhoGEF	UniProtKB/TrEMBL
	SM00233	UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/TrEMBL
	SSF48065	UniProtKB/TrEMBL
	SSF48097	UniProtKB/TrEMBL
UniProt	I3M2H1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)