Slc41a1 (solute carrier family 41 member 1) - Rat Genome Database

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Gene: Slc41a1 (solute carrier family 41 member 1) Ictidomys tridecemlineatus
Analyze
Symbol: Slc41a1
Name: solute carrier family 41 member 1
RGD ID: 12554373
Description: ENCODES a protein that exhibits inorganic cation transmembrane transporter activity (ortholog); magnesium ion transmembrane transporter activity (ortholog); magnesium:sodium antiporter activity (ortholog); INVOLVED IN cellular magnesium ion homeostasis (ortholog); cellular response to magnesium ion (ortholog); magnesium ion transmembrane transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: solute carrier family 41 member 1, transcript variant X1; solute carrier family 41 member 1, transcript variant X2; solute carrier family 41 member 1, transcript variant X3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934469,400,750 - 69,421,846 (+)NCBI
SpeTri2.0NW_0049365576,640,197 - 6,662,128 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

Comparative Map Data
Slc41a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934469,400,750 - 69,421,846 (+)NCBI
SpeTri2.0NW_0049365576,640,197 - 6,662,128 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC41A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1205,789,094 - 205,813,748 (-)EnsemblGRCh38hg38GRCh38
GRCh381205,789,095 - 205,813,759 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371205,758,223 - 205,782,326 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361204,024,844 - 204,048,784 (-)NCBINCBI36hg18NCBI36
Build 341202,489,878 - 202,513,818NCBI
Celera1178,894,473 - 178,918,404 (-)NCBI
Cytogenetic Map1q32.1NCBI
HuRef1176,922,911 - 176,946,834 (-)NCBIHuRef
CHM1_11207,181,729 - 207,205,652 (-)NCBICHM1_1
Slc41a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,755,236 - 131,776,601 (+)NCBIGRCm39mm39
GRCm39 Ensembl1131,755,231 - 131,776,603 (+)Ensembl
GRCm381131,828,012 - 131,848,863 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,827,493 - 131,848,865 (+)EnsemblGRCm38mm10GRCm38
MGSCv371133,724,589 - 133,745,440 (+)NCBIGRCm37mm9NCBIm37
MGSCv361133,655,523 - 133,676,409 (+)NCBImm8
Celera1134,432,506 - 134,453,353 (+)NCBICelera
Cytogenetic Map1E4NCBI
Slc41a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21343,270,792 - 43,291,162 (+)NCBI
Rnor_6.0 Ensembl1348,607,308 - 48,627,999 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01348,607,308 - 48,627,999 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01353,681,648 - 53,701,895 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41344,766,706 - 44,777,526 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11344,783,241 - 44,791,595 (+)NCBI
Celera1343,608,641 - 43,629,021 (+)NCBICelera
Cytogenetic Map13q13NCBI
Slc41a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540641,481,831 - 41,502,992 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540641,481,831 - 41,502,992 (-)NCBIChiLan1.0ChiLan1.0
SLC41A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11185,681,822 - 185,706,424 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1185,681,822 - 185,705,844 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01181,398,145 - 181,422,830 (-)NCBIMhudiblu_PPA_v0panPan3
SLC41A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1382,216,378 - 2,239,303 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl382,218,706 - 2,236,672 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha382,309,253 - 2,332,189 (-)NCBI
ROS_Cfam_1.0382,213,651 - 2,236,582 (-)NCBI
UMICH_Zoey_3.1382,209,583 - 2,230,157 (-)NCBI
UNSW_CanFamBas_1.0382,599,591 - 2,622,513 (-)NCBI
UU_Cfam_GSD_1.0382,800,021 - 2,822,961 (-)NCBI
SLC41A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl966,473,341 - 66,499,805 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1966,473,369 - 66,500,367 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2972,739,718 - 72,766,654 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC41A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12523,536,187 - 23,560,182 (+)NCBI
ChlSab1.1 Ensembl2523,535,263 - 23,560,174 (+)Ensembl
Vero_WHO_p1.0NW_02366605524,230,986 - 24,255,631 (+)NCBI
Slc41a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248075,445,111 - 5,465,844 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005329495   ⟹   XP_005329552
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934469,400,750 - 69,421,846 (+)NCBI
SpeTri2.0NW_0049365576,640,799 - 6,662,128 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005329496   ⟹   XP_005329553
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934469,400,750 - 69,419,806 (+)NCBI
SpeTri2.0NW_0049365576,640,799 - 6,660,088 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013360388   ⟹   XP_013215842
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365576,640,197 - 6,662,128 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040278288   ⟹   XP_040134222
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934469,401,309 - 69,421,846 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_013215842   ⟸   XM_013360388
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005329552   ⟸   XM_005329495
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005329553   ⟸   XM_005329496
- Peptide Label: isoform X2
- UniProtKB: I3MD97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040134222   ⟸   XM_040278288
- Peptide Label: isoform X1
Protein Domains
MgtE


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009287 ENTREZGENE
Ensembl Protein ENSSTOP00000008330 ENTREZGENE
NCBI Gene Slc41a1 ENTREZGENE
UniProt I3MD97 ENTREZGENE