Phtf2 (putative homeodomain transcription factor 2) - Rat Genome Database

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Gene: Phtf2 (putative homeodomain transcription factor 2) Ictidomys tridecemlineatus
Analyze
Symbol: Phtf2
Name: putative homeodomain transcription factor 2
RGD ID: 12553903
Description: ASSOCIATED WITH Chromosome 7q11.23 Deletion Syndrome, Distal, 1.2-MB (ortholog); genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN endoplasmic reticulum (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511860,032,716 - 60,178,093 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647921,197,474 - 21,302,060 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647921,156,501 - 21,302,060 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Phtf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511860,032,716 - 60,178,093 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647921,197,474 - 21,302,060 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647921,156,501 - 21,302,060 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHTF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38777,798,773 - 77,957,504 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl777,798,773 - 77,957,503 (+)EnsemblGRCh38hg38GRCh38
GRCh37777,428,090 - 77,586,821 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36777,307,433 - 77,424,475 (+)NCBINCBI36Build 36hg18NCBI36
Build 34777,114,147 - 77,231,190NCBI
Celera772,128,704 - 72,287,454 (+)NCBICelera
Cytogenetic Map7q11.23-q21.11NCBI
HuRef772,031,196 - 72,189,845 (+)NCBIHuRef
CHM1_1777,358,352 - 77,517,058 (+)NCBICHM1_1
T2T-CHM13v2.0779,050,700 - 79,209,413 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2776,761,172 - 76,918,889 (+)NCBI
Phtf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39520,963,662 - 21,087,122 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl520,963,661 - 21,087,122 (-)EnsemblGRCm39 Ensembl
GRCm38520,758,664 - 20,882,137 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl520,758,663 - 20,882,124 (-)EnsemblGRCm38mm10GRCm38
MGSCv37520,264,482 - 20,387,942 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36520,270,593 - 20,393,850 (-)NCBIMGSCv36mm8
Celera517,720,360 - 17,839,776 (-)NCBICelera
Cytogenetic Map5A3NCBI
cM Map59.83NCBI
Phtf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8415,107,341 - 15,222,683 (+)NCBIGRCr8
mRatBN7.2414,215,190 - 14,330,549 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl414,215,263 - 14,330,513 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx419,352,075 - 19,465,936 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0415,154,106 - 15,267,965 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0413,537,712 - 13,651,579 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0410,823,191 - 10,938,273 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl410,823,281 - 10,938,318 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0410,815,469 - 10,930,367 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.449,735,842 - 9,850,438 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.149,760,585 - 9,873,715 (+)NCBI
Celera49,776,667 - 9,890,034 (+)NCBICelera
Cytogenetic Map4q11NCBI
Phtf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554107,344,526 - 7,423,050 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554107,344,526 - 7,442,802 (-)NCBIChiLan1.0ChiLan1.0
PHTF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2695,658,913 - 95,819,654 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17143,923,652 - 144,084,662 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0769,724,248 - 69,885,162 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1783,538,530 - 83,698,107 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl783,579,418 - 83,695,756 (+)Ensemblpanpan1.1panPan2
PHTF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11817,810,450 - 17,923,837 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1817,810,469 - 17,921,645 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1817,403,303 - 17,516,663 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01818,129,829 - 18,243,340 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1818,129,812 - 18,243,340 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11817,880,121 - 17,993,696 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01817,819,639 - 17,933,061 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01818,089,315 - 18,202,619 (+)NCBIUU_Cfam_GSD_1.0
PHTF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9102,221,326 - 102,348,696 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19102,221,033 - 102,348,748 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29112,741,454 - 112,868,682 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PHTF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12170,974,679 - 71,134,791 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2170,974,474 - 71,134,673 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604232,789,719 - 32,949,477 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phtf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473926,981,590 - 27,070,866 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473926,965,769 - 27,070,808 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000015266   ⟹   ENSSTOP00000013679
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647921,197,474 - 21,302,060 (+)Ensembl
RefSeq Acc Id: XM_013356060   ⟹   XP_013211514
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511860,032,716 - 60,178,087 (+)NCBI
SpeTri2.0NW_00493647921,156,501 - 21,302,060 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040291685   ⟹   XP_040147619
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511860,064,637 - 60,178,093 (+)NCBI
RefSeq Acc Id: XM_040291686   ⟹   XP_040147620
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511860,049,200 - 60,178,093 (+)NCBI
RefSeq Acc Id: XM_040291687   ⟹   XP_040147621
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511860,032,795 - 60,178,087 (+)NCBI
RefSeq Acc Id: XM_040291688   ⟹   XP_040147622
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511860,032,716 - 60,178,093 (+)NCBI
RefSeq Acc Id: XM_040291689   ⟹   XP_040147623
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511860,117,517 - 60,178,093 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_013211514   ⟸   XM_013356060
- Peptide Label: isoform X1
- UniProtKB: I3MPG5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040147622   ⟸   XM_040291688
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040147621   ⟸   XM_040291687
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040147620   ⟸   XM_040291686
- Peptide Label: isoform X1
- UniProtKB: I3MPG5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040147619   ⟸   XM_040291685
- Peptide Label: isoform X1
- UniProtKB: I3MPG5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040147623   ⟸   XM_040291689
- Peptide Label: isoform X4
RefSeq Acc Id: ENSSTOP00000013679   ⟸   ENSSTOT00000015266
Protein Domains
PHTF1/2 N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015265 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015266.3 UniProtKB/TrEMBL
InterPro PHTF1/2 UniProtKB/TrEMBL
  TF_homeodomain_male UniProtKB/TrEMBL
NCBI Gene Phtf2 ENTREZGENE
PANTHER PROTEIN PHTF2 UniProtKB/TrEMBL
  PTHR12680 UniProtKB/TrEMBL
Pfam Phtf-FEM1B_bdg UniProtKB/TrEMBL
UniProt I3MPG5 ENTREZGENE, UniProtKB/TrEMBL