Tcf19 (transcription factor 19) - Rat Genome Database

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Gene: Tcf19 (transcription factor 19) Ictidomys tridecemlineatus
Analyze
Symbol: Tcf19
Name: transcription factor 19
RGD ID: 12553483
Description: INVOLVED IN G1/S transition of mitotic cell cycle (ortholog); regulation of gene expression (ortholog); type B pancreatic cell proliferation (ortholog); ASSOCIATED WITH Colonic Neoplasms (ortholog); genetic disease (ortholog); hepatocellular carcinoma (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transcription factor 19, transcript variant X1; transcription factor 19, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494634,456,593 - 34,460,560 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936837821,861 - 826,088 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936837821,884 - 825,766 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tcf19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494634,456,593 - 34,460,560 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936837821,861 - 826,088 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936837821,884 - 825,766 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCF19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,158,589 - 31,164,215 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,158,331 - 31,167,159 (+)EnsemblGRCh38hg38GRCh38
GRCh37631,126,366 - 31,131,992 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,234,282 - 31,239,971 (+)NCBINCBI36Build 36hg18NCBI36
Build 34631,235,225 - 31,238,517NCBI
Celera632,726,529 - 32,732,214 (+)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef630,928,725 - 30,934,410 (+)NCBIHuRef
CHM1_1631,128,403 - 31,134,092 (+)NCBICHM1_1
T2T-CHM13v2.0631,026,273 - 31,031,895 (+)NCBIT2T-CHM13v2.0
Tcf19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,823,627 - 35,827,730 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,823,631 - 35,827,721 (-)EnsemblGRCm39 Ensembl
GRCm381735,512,730 - 35,516,837 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,512,734 - 35,516,824 (-)EnsemblGRCm38mm10GRCm38
MGSCv371735,649,680 - 35,653,769 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361735,120,787 - 35,124,807 (-)NCBIMGSCv36mm8
Celera1739,027,683 - 39,031,767 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.69NCBI
Tcf19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,223,464 - 3,227,569 (+)NCBIGRCr8
mRatBN7.2203,218,756 - 3,222,861 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,218,693 - 3,223,271 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx203,280,083 - 3,284,200 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,285,054 - 3,289,173 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0203,309,260 - 3,313,380 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,740,454 - 3,746,964 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,744,395 - 3,746,964 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0205,831,137 - 5,833,706 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera20645,956 - 650,058 (+)NCBICelera
Cytogenetic Map20p12NCBI
Tcf19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955583989,388 - 994,908 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955583989,388 - 994,180 (+)NCBIChiLan1.0ChiLan1.0
TCF19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2545,720,267 - 45,725,700 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1641,684,681 - 41,688,874 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0630,904,470 - 30,909,912 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1631,769,855 - 31,775,236 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,769,893 - 31,775,236 (+)Ensemblpanpan1.1panPan2
TCF19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112855,321 - 859,109 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl12854,611 - 858,582 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha12992,755 - 996,522 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01293,320 - 97,092 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1293,336 - 97,059 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.112858,936 - 862,700 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.012927,196 - 930,963 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.012994,786 - 998,552 (+)NCBIUU_Cfam_GSD_1.0
TCF19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,558,384 - 23,562,069 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,558,326 - 23,562,074 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,271,544 - 27,275,261 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TCF19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11741,310,999 - 41,319,268 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1741,311,005 - 41,319,042 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604430,848,956 - 30,854,387 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tcf19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,765,742 - 24,770,135 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,766,212 - 24,770,136 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000026630   ⟹   ENSSTOP00000014900
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936837821,861 - 826,088 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000041369   ⟹   ENSSTOP00000032384
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936837821,861 - 824,425 (+)Ensembl
RefSeq Acc Id: XM_013365563   ⟹   XP_013221017
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494634,456,596 - 34,460,560 (+)NCBI
SpeTri2.0NW_004936837821,884 - 825,766 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021720685   ⟹   XP_021576360
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494634,456,593 - 34,460,437 (+)NCBI
SpeTri2.0NW_004936837821,884 - 825,651 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013221017 (Get FASTA)   NCBI Sequence Viewer  
  XP_021576360 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014900.2
  ENSSTOP00000032384.1
GenBank Protein KAG3289030 (Get FASTA)   NCBI Sequence Viewer  
  KAG3289031 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013221017   ⟸   XM_013365563
- Peptide Label: isoform X2
- UniProtKB: A0A287DFR2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021576360   ⟸   XM_021720685
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSSTOP00000014900   ⟸   ENSSTOT00000026630
RefSeq Acc Id: ENSSTOP00000032384   ⟸   ENSSTOT00000041369
Protein Domains
FHA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000026988 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000026630.2 UniProtKB/TrEMBL
  ENSSTOT00000041369.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.200.20 UniProtKB/TrEMBL
InterPro FHA_dom UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/TrEMBL
  TCF19 UniProtKB/TrEMBL
NCBI Gene Tcf19 ENTREZGENE
PANTHER PTHR15464 UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR 19 UniProtKB/TrEMBL
Pfam FHA UniProtKB/TrEMBL
PROSITE FHA_DOMAIN UniProtKB/TrEMBL
SMART FHA UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/TrEMBL
UniProt A0A287DFR2 ENTREZGENE, UniProtKB/TrEMBL
  I3MS05_ICTTR UniProtKB/TrEMBL