LOC101959252 (trace amine-associated receptor 8b) - Rat Genome Database

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Pathways
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Gene: LOC101959252 (trace amine-associated receptor 8b) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101959252 (Ensembl: TAAR8)
Name: trace amine-associated receptor 8b
RGD ID: 12553174
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); trace-amine receptor activity (inferred); INVOLVED IN G protein-coupled receptor signaling pathway (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946120,781,474 - 120,782,508 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936560560,690 - 561,724 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936560560,690 - 561,724 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005329763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000005523   ⟹   ENSSTOP00000004940
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936560560,690 - 561,724 (+)Ensembl
RefSeq Acc Id: XM_005329763   ⟹   XP_005329820
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946120,781,474 - 120,782,508 (+)NCBI
SpeTri2.0NW_004936560560,690 - 561,724 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005329820 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000004940.2
GenBank Protein KAG3290264 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005329820   ⟸   XM_005329763
- UniProtKB: I3M678 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000004940   ⟸   ENSSTOT00000005523
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000005542 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000005523.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  TAAR_fam UniProtKB/TrEMBL
NCBI Gene LOC101959252 ENTREZGENE
PANTHER HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
  TRACE AMINE-ASSOCIATED RECEPTOR 8 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  TRACEAMINER UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
SMART 7TM_GPCR_Srsx UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt I3M678 ENTREZGENE, UniProtKB/TrEMBL