Acads (acyl-CoA dehydrogenase short chain) - Rat Genome Database

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Gene: Acads (acyl-CoA dehydrogenase short chain) Ictidomys tridecemlineatus
Analyze
Symbol: Acads
Name: acyl-CoA dehydrogenase short chain
RGD ID: 12552826
Description: ENCODES a protein that exhibits acyl-CoA dehydrogenase activity (ortholog); butyryl-CoA dehydrogenase activity (ortholog); fatty-acyl-CoA binding (ortholog); INVOLVED IN butyrate catabolic process (ortholog); fatty acid beta-oxidation using acyl-CoA dehydrogenase (ortholog); response to glucocorticoid (ortholog); PARTICIPATES IN 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyacyl-CoA dehydrogenase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; ASSOCIATED WITH congestive heart failure (ortholog); short chain acyl-CoA dehydrogenase deficiency (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN centrosome (ortholog); mitochondrial matrix (ortholog); mitochondrial membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: acyl-CoA dehydrogenase, C-2 to C-3 short chain; short-chain specific acyl-CoA dehydrogenase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118145,758,321 - 145,773,223 (-)NCBI
SpeTri2.0NW_004936668257,214 - 272,089 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Acads
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118145,758,321 - 145,773,223 (-)NCBI
SpeTri2.0NW_004936668257,214 - 272,089 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACADS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12120,725,774 - 120,740,008 (+)EnsemblGRCh38hg38GRCh38
GRCh3812120,725,826 - 120,740,008 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712121,163,629 - 121,177,811 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612119,648,050 - 119,662,193 (+)NCBINCBI36hg18NCBI36
Build 3412119,626,385 - 119,640,530NCBI
Celera12120,797,834 - 120,812,046 (+)NCBI
Cytogenetic Map12q24.31NCBI
HuRef12118,172,924 - 118,187,098 (+)NCBIHuRef
CHM1_112121,132,316 - 121,146,588 (+)NCBICHM1_1
Acads
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395115,248,358 - 115,257,405 (-)NCBIGRCm39mm39
GRCm39 Ensembl5115,248,358 - 115,257,405 (-)Ensembl
GRCm385115,110,299 - 115,119,346 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5115,110,299 - 115,119,346 (-)EnsemblGRCm38mm10GRCm38
MGSCv375115,560,308 - 115,569,322 (-)NCBIGRCm37mm9NCBIm37
MGSCv365115,371,298 - 115,380,312 (-)NCBImm8
Celera5112,206,409 - 112,215,487 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map555.99NCBI
Acads
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21241,493,650 - 41,502,897 (+)NCBI
Rnor_6.0 Ensembl1247,254,484 - 47,263,747 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01247,254,503 - 47,263,747 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01249,049,549 - 49,059,164 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41242,765,284 - 42,774,528 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11242,628,671 - 42,637,916 (+)NCBI
Celera1243,112,383 - 43,121,613 (+)NCBICelera
Cytogenetic Map12q16NCBI
Acads
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545510,928,560 - 10,942,926 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545510,928,560 - 10,942,748 (-)NCBIChiLan1.0ChiLan1.0
ACADS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112121,682,113 - 121,696,376 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12121,682,113 - 121,696,376 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012118,309,303 - 118,323,489 (+)NCBIMhudiblu_PPA_v0panPan3
ACADS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12616,572,936 - 16,584,760 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2616,572,947 - 16,584,194 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2616,574,053 - 16,587,252 (+)NCBI
ROS_Cfam_1.02616,837,490 - 16,850,715 (+)NCBI
UMICH_Zoey_3.12616,798,031 - 16,811,155 (+)NCBI
UNSW_CanFamBas_1.02616,873,738 - 16,886,985 (+)NCBI
UU_Cfam_GSD_1.02616,916,088 - 16,929,300 (+)NCBI
ACADS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1440,624,213 - 40,659,928 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11440,642,810 - 40,656,922 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21443,110,578 - 43,124,662 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap14q16.2-q23.2NCBI
ACADS
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111116,083,156 - 116,096,554 (+)NCBI
ChlSab1.1 Ensembl11116,083,276 - 116,096,607 (+)Ensembl
Acads
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474712,954,635 - 12,966,320 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005336797   ⟹   XP_005336854
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118145,758,321 - 145,773,223 (-)NCBI
SpeTri2.0NW_004936668257,214 - 272,089 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040289386   ⟹   XP_040145320
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118145,758,321 - 145,773,223 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005336854 (Get FASTA)   NCBI Sequence Viewer  
  XP_040145320 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005336854   ⟸   XM_005336797
- Peptide Label: isoform X1
- UniProtKB: I3N2U4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040145320   ⟸   XM_040289386
- Peptide Label: isoform X2
Protein Domains
Acyl-CoA_dh_1   Acyl-CoA_dh_M   Acyl-CoA_dh_N


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028932 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000018690 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000025197 UniProtKB/TrEMBL
Gene3D-CATH 1.10.540.10 UniProtKB/TrEMBL
InterPro Acyl-CoA_DH_CS UniProtKB/TrEMBL
  Acyl-CoA_Oxase/DH_cen-dom UniProtKB/TrEMBL
  AcylCo_DH/oxidase_C UniProtKB/TrEMBL
  AcylCo_DH_C-like UniProtKB/TrEMBL
  AcylCoA_DH/ox_N UniProtKB/TrEMBL
  AcylCoA_DH/ox_N_sf UniProtKB/TrEMBL
  AcylCoA_DH/oxidase_NM_dom UniProtKB/TrEMBL
NCBI Gene Acads ENTREZGENE
Pfam Acyl-CoA_dh_1 UniProtKB/TrEMBL
  Acyl-CoA_dh_M UniProtKB/TrEMBL
  Acyl-CoA_dh_N UniProtKB/TrEMBL
PROSITE ACYL_COA_DH_1 UniProtKB/TrEMBL
  ACYL_COA_DH_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF47203 UniProtKB/TrEMBL
  SSF56645 UniProtKB/TrEMBL
UniProt I3N2U4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-10-04 Acads  acyl-CoA dehydrogenase short chain    acyl-CoA dehydrogenase, C-2 to C-3 short chain  Symbol and/or name change 5135510 APPROVED