Itga7 (integrin subunit alpha 7) - Rat Genome Database

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Gene: Itga7 (integrin subunit alpha 7) Ictidomys tridecemlineatus
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Symbol: Itga7
Name: integrin subunit alpha 7
RGD ID: 12552715
Description: ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); integrin binding (ortholog); laminin binding (ortholog); INVOLVED IN blood vessel morphogenesis (ortholog); cell adhesion (ortholog); cell migration (ortholog); PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH arteriosclerosis (ortholog); cardiomyopathy (ortholog); Colonic Neoplasms (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); integrin alpha7-beta1 complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: integrin alpha-7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494558,683,840 - 58,709,601 (+)NCBI
SpeTri2.0NW_004936646160,661 - 179,454 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Itga7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494558,683,840 - 58,709,601 (+)NCBI
SpeTri2.0NW_004936646160,661 - 179,454 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITGA7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1255,684,568 - 55,716,043 (-)EnsemblGRCh38hg38GRCh38
GRCh381255,684,568 - 55,716,037 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371256,078,352 - 56,106,192 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361254,364,619 - 54,387,894 (-)NCBINCBI36hg18NCBI36
Build 341254,364,622 - 54,387,894NCBI
Celera1255,730,824 - 55,758,560 (-)NCBI
Cytogenetic Map12q13.2NCBI
HuRef1253,117,170 - 53,144,908 (-)NCBIHuRef
CHM1_11256,045,138 - 56,072,879 (-)NCBICHM1_1
Itga7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910128,769,633 - 128,794,155 (+)NCBIGRCm39mm39
GRCm39 Ensembl10128,769,687 - 128,794,151 (+)Ensembl
GRCm3810128,933,421 - 128,958,286 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,933,818 - 128,958,282 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710128,370,869 - 128,395,342 (+)NCBIGRCm37mm9NCBIm37
MGSCv3610128,336,767 - 128,361,231 (+)NCBImm8
Celera10131,326,513 - 131,351,034 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1077.2NCBI
Itga7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.271,360,125 - 1,388,886 (+)NCBI
Rnor_6.0 Ensembl73,355,116 - 3,384,675 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.073,355,079 - 3,383,886 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.073,325,268 - 3,354,361 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.472,230,747 - 2,269,403 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.172,230,888 - 2,269,401 (+)NCBI
Celera71,231,167 - 1,259,461 (+)NCBICelera
Cytogenetic Map7q11NCBI
Itga7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554583,321,259 - 3,343,275 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554583,322,735 - 3,343,275 (-)NCBIChiLan1.0ChiLan1.0
ITGA7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11233,923,549 - 33,950,892 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1233,923,549 - 33,950,886 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01233,195,602 - 33,226,796 (+)NCBIMhudiblu_PPA_v0panPan3
ITGA7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11091,782 - 110,839 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1091,391 - 110,817 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha10154,177 - 173,232 (-)NCBI
ROS_Cfam_1.01099,047 - 118,100 (-)NCBI
UMICH_Zoey_3.11076,762 - 95,812 (-)NCBI
UNSW_CanFamBas_1.010319,641 - 338,710 (-)NCBI
UU_Cfam_GSD_1.010443,742 - 462,792 (-)NCBI
ITGA7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl521,126,565 - 21,148,776 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1521,126,565 - 21,150,875 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ITGA7
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11151,634,324 - 51,656,251 (-)NCBI
Itga7
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480212,303,969 - 12,332,737 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021733468   ⟹   XP_021589143
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494558,690,865 - 58,709,601 (+)NCBI
SpeTri2.0NW_004936646160,661 - 179,454 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040280509   ⟹   XP_040136443
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494558,683,840 - 58,709,601 (+)NCBI
RefSeq Acc Id: XM_040280510   ⟹   XP_040136444
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494558,696,320 - 58,709,601 (+)NCBI
RefSeq Acc Id: XM_040280511   ⟹   XP_040136445
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494558,696,320 - 58,709,600 (+)NCBI
RefSeq Acc Id: XM_040280512   ⟹   XP_040136446
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494558,690,782 - 58,709,601 (+)NCBI
RefSeq Acc Id: XM_040280513   ⟹   XP_040136447
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494558,690,782 - 58,709,600 (+)NCBI
RefSeq Acc Id: XM_040280514   ⟹   XP_040136448
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494558,699,106 - 58,709,599 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_021589143   ⟸   XM_021733468
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_040136443   ⟸   XM_040280509
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040136446   ⟸   XM_040280512
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040136447   ⟸   XM_040280513
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040136444   ⟸   XM_040280510
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040136445   ⟸   XM_040280511
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040136448   ⟸   XM_040280514
- Peptide Label: isoform X6
Protein Domains
Integrin_alpha2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010310 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000009265 UniProtKB/TrEMBL
  ENSSTOP00000024998 UniProtKB/TrEMBL
  ENSSTOP00000026140 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010326 UniProtKB/TrEMBL
  ENSSTOT00000034458 UniProtKB/TrEMBL
  ENSSTOT00000040740 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.130 UniProtKB/TrEMBL
InterPro FG-GAP UniProtKB/TrEMBL
  Int_alpha_beta-p UniProtKB/TrEMBL
  Integrin_alpha UniProtKB/TrEMBL
  Integrin_alpha-2 UniProtKB/TrEMBL
  Integrin_alpha_N UniProtKB/TrEMBL
  Integrin_dom_sf UniProtKB/TrEMBL
NCBI Gene Itga7 ENTREZGENE
Pfam FG-GAP UniProtKB/TrEMBL
  Integrin_alpha2 UniProtKB/TrEMBL
PRINTS INTEGRINA UniProtKB/TrEMBL
PROSITE FG_GAP UniProtKB/TrEMBL
SMART Int_alpha UniProtKB/TrEMBL
Superfamily-SCOP SSF69179 UniProtKB/TrEMBL
UniProt A0A287CUQ6_ICTTR UniProtKB/TrEMBL
  A0A287CXS8_ICTTR UniProtKB/TrEMBL
  I3MFA1_ICTTR UniProtKB/TrEMBL