Zbtb24 (zinc finger and BTB domain containing 24)

Gene: Zbtb24 (zinc finger and BTB domain containing 24) Ictidomys tridecemlineatus

Analyze

Symbol:

Zbtb24

Name:

zinc finger and BTB domain containing 24

RGD ID:

12552307

Description:

ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 4 (ortholog); genetic disease (ortholog); immunodeficiency-centromeric instability-facial anomalies syndrome 2 (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

zinc finger and BTB domain containing 24, transcript variant X1; zinc finger and BTB domain containing 24, transcript variant X2; zinc finger and BTB domain-containing protein 24

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	101,311,416 - 101,331,250 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936564	5,587,560 - 5,606,189 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936564	5,588,360 - 5,606,140 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease type 4 (ISO)

genetic disease (ISO)

immunodeficiency-centromeric instability-facial anomalies syndrome 2 (ISO)

Kabuki Syndrome 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

hematopoietic progenitor cell differentiation (IEA,ISO)

regulation of transcription by RNA polymerase II (IEA)

Molecular Function

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Zbtb24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	101,311,416 - 101,331,250 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936564	5,587,560 - 5,606,189 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936564	5,588,360 - 5,606,140 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZBTB24
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	109,462,594 - 109,483,219 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	109,460,632 - 109,483,239 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	109,783,797 - 109,804,422 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	109,890,412 - 109,911,133 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	109,890,411 - 109,911,133	NCBI
Celera	6	110,530,317 - 110,551,038 (-)	NCBI		Celera
Cytogenetic Map	6	q21	NCBI
HuRef	6	107,349,834 - 107,370,476 (-)	NCBI		HuRef
CHM1_1	6	110,046,805 - 110,067,503 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	110,640,632 - 110,661,258 (-)	NCBI		T2T-CHM13v2.0

Zbtb24
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	41,326,354 - 41,341,578 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	41,326,379 - 41,341,570 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	41,450,358 - 41,465,582 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	41,450,383 - 41,465,574 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	41,170,202 - 41,185,380 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	41,138,811 - 41,153,989 (+)	NCBI		MGSCv36	mm8
Celera	10	42,336,649 - 42,351,827 (+)	NCBI		Celera
Cytogenetic Map	10	B1	NCBI
cM Map	10	22.38	NCBI

Zbtb24
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	46,525,982 - 46,546,363 (+)	NCBI		GRCr8
mRatBN7.2	20	44,943,302 - 44,965,329 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	44,947,297 - 44,963,963 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	46,664,806 - 46,681,470 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	46,314,981 - 46,331,645 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	47,021,740 - 47,038,172 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	46,168,149 - 46,189,806 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	46,168,177 - 46,189,806 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	47,865,623 - 47,882,126 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	45,409,557 - 45,426,510 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	45,431,891 - 45,434,228 (+)	NCBI
Celera	20	54,989,650 - 55,005,488 (-)	NCBI		Celera
Cytogenetic Map	20	q12	NCBI

Zbtb24
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955411	34,503,812 - 34,521,196 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955411	34,502,355 - 34,521,196 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZBTB24
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	129,474,390 - 129,492,024 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	127,365,739 - 127,383,347 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	107,265,762 - 107,286,397 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	111,314,128 - 111,334,687 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	111,314,134 - 111,334,674 (-)	Ensembl	panpan1.1		panPan2

ZBTB24
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	66,368,160 - 66,380,631 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	66,369,083 - 66,380,759 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	66,187,958 - 66,200,694 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	67,253,566 - 67,265,564 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	12	66,601,180 - 66,613,923 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	66,450,012 - 66,462,752 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	66,721,724 - 66,734,464 (-)	NCBI		UU_Cfam_GSD_1.0

ZBTB24
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	75,531,036 - 75,548,772 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	75,531,034 - 75,548,795 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	84,870,373 - 84,876,757 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZBTB24
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	64,383,306 - 64,401,148 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	64,384,519 - 64,400,875 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	36,676,237 - 36,694,064 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zbtb24
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624916	720,119 - 738,934 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005330158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013360692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040283190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040283191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040283192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005732928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_257866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000011458 ⟹ ENSSTOP00000010283

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936564	5,588,860 - 5,604,760 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000042078 ⟹ ENSSTOP00000026398

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936564	5,587,560 - 5,606,189 (-)	Ensembl

RefSeq Acc Id:

XM_005330158 ⟹ XP_005330215

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	101,311,416 - 101,331,250 (-)	NCBI
SpeTri2.0	NW_004936564	5,588,360 - 5,606,140 (-)	NCBI

Sequence:

show sequence

GCCGCGCTTCCGGGTTGGCTGCGCCGACGCAGAAGCAGCATCCGCGGCCCAGGAATCCTAGCTG
CGGCCTGGGCAAGCCCGGTCCTGGGCGGCCGGCGTGGAGGTCCCCGCCTGGCCTCCAGGTAGGC
TGGGCCGCGGCCCGGACCGCGCCGGGCGCCCATAAGAGCCGCCTTGACTTCTAAAGAAAATGGC
AGAAACATCACCACAGCCTTCTGAACAGCTTGTTGTTCACTCAGATACTCACAGTGACACTGTC
CTGGCCAGTTTTGAGGATCAGAGAAAGAAAGGCTTTCTCTGTGACATTACTTTAATCGTGGAGA
ATGTGCATTTCCGGGCCCACAAAGCCTTACTTGCTGCTAGTAGCGAATATTTCTCAATGATGTT
TGCAGAGGAGGGGGAGATTGGCCAATCCATTTATATGCTGGAAGGCATGGTTGCAGACACCTTT
GGCATCCTGCTAGAATTTATCTACACAGGTTATCTCCATGCTAGTGAGAAAAGTACAGAACAAA
TCCTGGCTACTGCTCAGTTCTTAAAAGTCTACGACTTGATAAAGGCTTATACAGACTTCCAGAA
TAATCATAACTCCCCAAAGCCAACAACTTTGAACAGAGCTGGTACTCCAGTTGTTGTTATTTCT
AATAAGAAAAATGATCCTCCAAAACGGAAACGGGGAAGACCAAGAAAAGTCAATAGTTTGCAGG
AGGGGAAATCAGAACAGGCTGCAGAGGAGGAAATCCAGCTAAGAGTGAACAATTCGGTTCAGAA
TAGACAAAACTTTGTGGTTAAAGAAGGAGACAATGGTGTACTGAATGAACAGATTCCAGTAAAA
GAAAAGGAAGGATCTGACCCTGCTTGTGAACCAGGTAGAATGGAGGAGATATCCACTGAAAAAG
ATGAGAACTGTGATCCCAAGACCCAGGATGGGCAGGACCACCAGAGTAGATGCAGCAAGCGGAG
GATTCGGAGGTCTGTCAAACTTAAAGATTATAAACTTGTTGGGGATGAAGATGACCAGGCTTCA
GCCAAGAGGATATATGGAAGGAGAAAGCGCCCCAGTGGTCCTGAGGCCCGCTGTAAAGACTGTG
GCAAAGTCTTTAAATACAATCACTTTTTAGCAATCCATCAGAGGAGCCACACAGGGGAGCGACC
CTTCAAATGTAATGAGTGTGGAAAAGGCTTTGCCCAGAAGCACTCTTTGCAGGTCCACACCAGG
ATGCACACAGGCGAGCGGCCATACACCTGCACCGTGTGCAGCAAGGCTCTGACCACCAAGCACT
CACTGCTGGAGCACATGAGCCTGCACTCAGGACAGAAGTCTTTCACCTGTGATCAGTGTGGAAA
GTATTTCAGCCAGAAAAGACAACTAAAGAGTCATTACCGAGTTCATACAGGCCACTCATTACCG
GAATGCACCCACTGTCAACGCAAATTCATGGATGTGTCTCAGCTAAAGAAACATCTACGAACAC
ACACAGGTGAAAAGCCATTTACTTGTGAAATCTGTGGCAAGTCTTTCACGGCAAAGAGTTCTCT
TCAGACCCACATCAGAATTCATCGAGGAGAAAAGCCATACTCCTGTGGCATCTGTGGCAAATCC
TTCTCTGACTCCAGTGCCAAAAGGAGACATTGCATTCTGCACACAGGCAAAAAGCCTTTCTCCT
GCCCAGAGTGTAACTTACAGTTTGCTCGCTTAGACAACTTGAAGGCTCACTTGAAAATCCACAG
TAAAGAGAAGCATGCATCAGATGCCAGCAGTGTTTCTGGTAGTAGTAGTAGTACAGAAGAGGTC
AGAAATATTCTTCAGCTACAGCCATACCAGCTCTCTACCTCTGGAGAGCAAGAGATTCAGCTTC
TGGTAACTGATTCTGTACATAACATCAATTTCATGCCTGGTCCTAGTCAGGGAATCAGTATCAT
GACTGCTGAGAGTTCCCAGAACATGACCGCAGACCAGGCTGCTAATCTCACCCTGCTCACACAG
CAGCCAGAGCAACTGCAGAATTTAATTCTTTCAGCTCAGCAGGAGCAAACAGAACACATTCAGA
GTCTCAATATGATTGAAAGCCAGATGGAGCCCTCACAGACAGAGCCAGTGCATGTAATTACACT
GTCCAAGGAAACCCTGGAACATCTTCATGCCCATCAAGAGCAAACAGAGGAGCTCCATTTAGCA
GCAAGTGCTTCAGATCCAGCTCAGCACCTGCACCTGACTCAGGAGCCTGAATCACCACCACCTA
CTCACCATGTGCCCCAGCCCACTCCACTTGTCCAGGAGCAAAGCTGACCTGTGAACATGTTTGA
CTGCTCCAGCTATAGCAGGATGGTAAATGCTTGAAATCAGGCTCTCTGAGCTGACAACTTAGGT
TCTTAAAGAGATGTGATAGCCATAAGACGTTTATAATGTGCTCTGTCTGGGCAGCTAAACATGT
TTGTTTTTTGTTTTTTGTTTTTTGTTTTTTTGTGTGTGTGTGTGTGTGTGTATGTTGTATCATG
TTTCCTCTATAGTACCAAATAATGATAAATGGTTTTCATTTTCATTATAACATCTCTTAAAGAA
TAGGGTAATTTTTCTTTGAGGTGTTGATTTAGGCTTTTTGATAAGTATTAAAATGTTCACCAGC
CAAAGGTTATGGTCTTTCTGACCTTTCCAGTATATTCTTTATTATTCAAAACAAATGAAGTCAT
ATATAGATTGAATTGGGTAAAGCAGTTGCTTCTACTTCTTTATTTCTCTTAGGCAACACAGTTG
CCAGTCCAAGATAAGTCAGGGCTAAATATGACAAATCACAACATTTAGTTGACCCCCTAAGAGT
AATTTTTATTTTTTTCTATACTAAGCATTGAACCCAGGGCCTCTCGAATG

hide sequence

RefSeq Acc Id:

XM_013360692 ⟹ XP_013216146

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	101,324,528 - 101,331,250 (-)	NCBI
SpeTri2.0	NW_004936564	5,599,446 - 5,606,137 (-)	NCBI

Sequence:

show sequence

GCGCTTCCGGGTTGGCTGCGCCGACGCAGAAGCAGCATCCGCGGCCCAGGAATCCTAGCTGCGG
CCTGGGCAAGCCCGGTCCTGGGCGGCCGGCGTGGAGGTCCCCGCCTGGCCTCCAGGTAGGCTGG
GCCGCGGCCCGGACCGCGCCGGGCGCCCATAAGAGCCGCCTTGACTTCTAAAGAAAATGGCAGA
AACATCACCACAGCCTTCTGAACAGCTTGTTGTTCACTCAGATACTCACAGTGACACTGTCCTG
GCCAGTTTTGAGGATCAGAGAAAGAAAGGCTTTCTCTGTGACATTACTTTAATCGTGGAGAATG
TGCATTTCCGGGCCCACAAAGCCTTACTTGCTGCTAGTAGCGAATATTTCTCAATGATGTTTGC
AGAGGAGGGGGAGATTGGCCAATCCATTTATATGCTGGAAGGCATGGTTGCAGACACCTTTGGC
ATCCTGCTAGAATTTATCTACACAGGTTATCTCCATGCTAGTGAGAAAAGTACAGAACAAATCC
TGGCTACTGCTCAGTTCTTAAAAGTCTACGACTTGATAAAGGCTTATACAGACTTCCAGAATAA
TCATAACTCCCCAAAGCCAACAACTTTGAACAGAGCTGGTACTCCAGTTGTTGTTATTTCTAAT
AAGAAAAATGATCCTCCAAAACGGAAACGGGGAAGACCAAGAAAAGTCAATAGTTTGCAGGAGG
GGAAATCAGAACAGGCTGCAGAGGAGGAAATCCAGCTAAGAGTGAACAATTCGGTTCAGAATAG
ACAAAACTTTGTGGTTAAAGAAGGAGACAATGGTGTACTGAATGAACAGATTCCAGTAAAAGAA
AAGGAAGGATCTGACCCTGCTTGTGAACCAGGTAGAATGGAGGAGATATCCACTGAAAAAGATG
AGAACTGTGATCCCAAGACCCAGGATGGGCAGGACCACCAGAGTAGATGCAGCAAGCGGAGGAT
TCGGAGGTCTGTCAAACTTAAAGATTATAAACTTGTTGGGGATGAAGATGACCAGGCTTCAGCC
AAGAGGATATATGGAAGGAGAAAGCGCCCCAGTGGTCCTGAGGCCCGCTGTAAAGACTGTGGCA
AAGTCTTTAAATACAATCACTTTTTAGCAATCCATCAGAGGAGCCACACAGGGGAGCGACCCTT
CAAATGTAATGAGTGTGGAAAAGGCTTTGCCCAGAAGCACTCTTTGCAGGTCCACACCAGGATG
CACACAGGCGAGCGGCCATACACCTGCACCGTGTGCAGCAAGGCTCTGACCACCAAGCACTCAC
TGCTGGAGCACATGAGCCTGCACTCAGGACAGAAGTCTTTCACCTGTGATCAGTGTGGAAAGTA
TTTCAGCCAGAAAAGACAACTAAAGAGTCATTACCGAGTTCATACAGGGAAGTGCTTTAACACA
AATCACTGAAGAAATGCAGGGAGAGCATATATGCACTGACACTTTTTTTATTGTTGCGACAAGG
C

hide sequence

RefSeq Acc Id:

XM_040283190 ⟹ XP_040139124

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	101,311,416 - 101,331,250 (-)	NCBI

RefSeq Acc Id:

XM_040283191 ⟹ XP_040139125

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	101,314,877 - 101,331,250 (-)	NCBI

RefSeq Acc Id:

XM_040283192 ⟹ XP_040139126

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	101,324,528 - 101,331,250 (-)	NCBI

RefSeq Acc Id:

XR_005732928

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	101,324,528 - 101,331,250 (-)	NCBI

RefSeq Acc Id:

XR_257866

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	101,311,416 - 101,331,250 (-)	NCBI
SpeTri2.0	NW_004936564	5,588,360 - 5,606,137 (-)	NCBI

Sequence:

show sequence

GCGCTTCCGGGTTGGCTGCGCCGACGCAGAAGCAGCATCCGCGGCCCAGGAATCCTAGCTGCGG
CCTGGGCAAGCCCGGTCCTGGGCGGCCGGCGTGGAGGTCCCCGCCTGGCCTCCAGGTAGGCTGG
GCCGCGGCCCGGACCGCGCCGGGCGCCCATAAGAGCCGCCTTGACTTCTAAAGAAAATGGCAGA
AACATCACCACAGCCTTCTGAACAGCTTGTTGTTCACTCAGATACTCACAGTGACACTGTCCTG
GCCAGTTTTGAGGATCAGAGAAAGAAAGGCTTTCTCTGTGACATTACTTTAATCGTGGAGAATG
TGCATTTCCGGGCCCACAAAGCCTTACTTGCTGCTAGTAGCGAATATTTCTCAATGATGTTTGC
AGAGGAGGGGGAGATTGGCCAATCCATTTATATGCTGGAAGGCATGGTTGCAGACACCTTTGGC
ATCCTGCTAGAATTTATCTACACAGGTTATCTCCATGCTAGTGAGAAAAGTACAGAACAAATCC
TGGCTACTGCTCAGTTCTTAAAAGTCTACGACTTGATAAAGGCTTATACAGACTTCCAGAATAA
TCATAACTCCCCAAAGCCAACAACTTTGAACAGAGCTGGTACTCCAGTTGTTGTTATTTCTAAT
AAGAAAAATGATCCTCCAAAACGGAAACGGGGAAGACCAAGAAAAGTCAATAGTTTGCAGGAGG
GGAAATCAGAACAGGCTGCAGAGGAGGAAATCCAGCTAAGAGTGAACAATTCGGTTCAGAATAG
ACAAAACTTTGTGGTTAAAGAAGGAGACAATGGTGTACTGAATGAACAGATTCCAGTAAAAGAA
AAGGAAGGATCTGACCCTGCTTGTGAACCAGGTAGAATGGAGGAGATATCCACTGAAAAAGATG
AGAACTGTGATCCCAAGACCCAGGATGGGCAGGACCACCAGAGTAGATGCAGCAAGCGGAGGAT
TCGGAGGTCTGTCAAACTTAAAGATTATAAACTTGTTGGGGATGAAGATGACCAGGCTTCAGCC
AAGAGGATATATGGAAGGAGAAAGCGCCCCAGTGGTCCTGAGGCCCGCTGTAAAGACTGTGGCA
AAGTCTTTAAATACAATCACTTTTTAGCAATCCATCAGAGGAGCCACACAGGGGAGCGACCCTT
CAAATGTAATGAGTGTGGAAAAGGCTTTGCCCAGAAGCACTCTTTGCAGGTCCACACCAGGATG
CACACAGGCGAGCGGCCATACACCTGCACCGTGTGCAGCAAGGCTCTGACCACCAAGCACTCAC
TGCTGGAGCACATGAGCCTGCACTCAGAAGTCTTTCACCTGTGATCAGTGTGGAAAGTATTTCA
GCCAGAAAAGACAACTAAAGAGTCATTACCGAGTTCATACAGGCCACTCATTACCGGAATGCAC
CCACTGTCAACGCAAATTCATGGATGTGTCTCAGCTAAAGAAACATCTACGAACACACACAGGT
GAAAAGCCATTTACTTGTGAAATCTGTGGCAAGTCTTTCACGGCAAAGAGTTCTCTTCAGACCC
ACATCAGAATTCATCGAGGAGAAAAGCCATACTCCTGTGGCATCTGTGGCAAATCCTTCTCTGA
CTCCAGTGCCAAAAGGAGACATTGCATTCTGCACACAGGCAAAAAGCCTTTCTCCTGCCCAGAG
TGTAACTTACAGTTTGCTCGCTTAGACAACTTGAAGGCTCACTTGAAAATCCACAGTAAAGAGA
AGCATGCATCAGATGCCAGCAGTGTTTCTGGTAGTAGTAGTAGTACAGAAGAGGTCAGAAATAT
TCTTCAGCTACAGCCATACCAGCTCTCTACCTCTGGAGAGCAAGAGATTCAGCTTCTGGTAACT
GATTCTGTACATAACATCAATTTCATGCCTGGTCCTAGTCAGGGAATCAGTATCATGACTGCTG
AGAGTTCCCAGAACATGACCGCAGACCAGGCTGCTAATCTCACCCTGCTCACACAGCAGCCAGA
GCAACTGCAGAATTTAATTCTTTCAGCTCAGCAGGAGCAAACAGAACACATTCAGAGTCTCAAT
ATGATTGAAAGCCAGATGGAGCCCTCACAGACAGAGCCAGTGCATGTAATTACACTGTCCAAGG
AAACCCTGGAACATCTTCATGCCCATCAAGAGCAAACAGAGGAGCTCCATTTAGCAGCAAGTGC
TTCAGATCCAGCTCAGCACCTGCACCTGACTCAGGAGCCTGAATCACCACCACCTACTCACCAT
GTGCCCCAGCCCACTCCACTTGTCCAGGAGCAAAGCTGACCTGTGAACATGTTTGACTGCTCCA
GCTATAGCAGGATGGTAAATGCTTGAAATCAGGCTCTCTGAGCTGACAACTTAGGTTCTTAAAG
AGATGTGATAGCCATAAGACGTTTATAATGTGCTCTGTCTGGGCAGCTAAACATGTTTGTTTTT
TGTTTTTTGTTTTTTGTTTTTTTGTGTGTGTGTGTGTGTGTGTATGTTGTATCATGTTTCCTCT
ATAGTACCAAATAATGATAAATGGTTTTCATTTTCATTATAACATCTCTTAAAGAATAGGGTAA
TTTTTCTTTGAGGTGTTGATTTAGGCTTTTTGATAAGTATTAAAATGTTCACCAGCCAAAGGTT
ATGGTCTTTCTGACCTTTCCAGTATATTCTTTATTATTCAAAACAAATGAAGTCATATATAGAT
TGAATTGGGTAAAGCAGTTGCTTCTACTTCTTTATTTCTCTTAGGCAACACAGTTGCCAGTCCA
AGATAAGTCAGGGCTAAATATGACAAATCACAACATTTAGTTGACCCCCTAAGAGTAATTTTTA
TTTTTTTCTATACTAAGCATTGAACCCAGGGCCTCTCGAATG

hide sequence

Protein Sequences


Protein RefSeqs	XP_005330215	(Get FASTA)	NCBI Sequence Viewer
	XP_013216146	(Get FASTA)	NCBI Sequence Viewer
	XP_040139124	(Get FASTA)	NCBI Sequence Viewer
	XP_040139125	(Get FASTA)	NCBI Sequence Viewer
	XP_040139126	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000010283.3
	ENSSTOP00000026398.1
GenBank Protein	KAG3290044	(Get FASTA)	NCBI Sequence Viewer
	KAG3290045	(Get FASTA)	NCBI Sequence Viewer
	KAG3290046	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005330215 ⟸ XM_005330158
- Peptide Label:	isoform X1
- UniProtKB:	A0A287CYQ0 (UniProtKB/TrEMBL), I3MHD5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAETSPQPSEQLVVHSDTHSDTVLASFEDQRKKGFLCDITLIVENVHFRAHKALLAASSEYFSM MFAEEGEIGQSIYMLEGMVADTFGILLEFIYTGYLHASEKSTEQILATAQFLKVYDLIKAYTDF QNNHNSPKPTTLNRAGTPVVVISNKKNDPPKRKRGRPRKVNSLQEGKSEQAAEEEIQLRVNNSV QNRQNFVVKEGDNGVLNEQIPVKEKEGSDPACEPGRMEEISTEKDENCDPKTQDGQDHQSRCSK RRIRRSVKLKDYKLVGDEDDQASAKRIYGRRKRPSGPEARCKDCGKVFKYNHFLAIHQRSHTGE RPFKCNECGKGFAQKHSLQVHTRMHTGERPYTCTVCSKALTTKHSLLEHMSLHSGQKSFTCDQC GKYFSQKRQLKSHYRVHTGHSLPECTHCQRKFMDVSQLKKHLRTHTGEKPFTCEICGKSFTAKS SLQTHIRIHRGEKPYSCGICGKSFSDSSAKRRHCILHTGKKPFSCPECNLQFARLDNLKAHLKI HSKEKHASDASSVSGSSSSTEEVRNILQLQPYQLSTSGEQEIQLLVTDSVHNINFMPGPSQGIS IMTAESSQNMTADQAANLTLLTQQPEQLQNLILSAQQEQTEHIQSLNMIESQMEPSQTEPVHVI TLSKETLEHLHAHQEQTEELHLAASASDPAQHLHLTQEPESPPPTHHVPQPTPLVQEQS hide sequence

RefSeq Acc Id:

XP_013216146 ⟸ XM_013360692

- Peptide Label:

isoform X4

- Sequence:

show sequence

MAETSPQPSEQLVVHSDTHSDTVLASFEDQRKKGFLCDITLIVENVHFRAHKALLAASSEYFSM
MFAEEGEIGQSIYMLEGMVADTFGILLEFIYTGYLHASEKSTEQILATAQFLKVYDLIKAYTDF
QNNHNSPKPTTLNRAGTPVVVISNKKNDPPKRKRGRPRKVNSLQEGKSEQAAEEEIQLRVNNSV
QNRQNFVVKEGDNGVLNEQIPVKEKEGSDPACEPGRMEEISTEKDENCDPKTQDGQDHQSRCSK
RRIRRSVKLKDYKLVGDEDDQASAKRIYGRRKRPSGPEARCKDCGKVFKYNHFLAIHQRSHTGE
RPFKCNECGKGFAQKHSLQVHTRMHTGERPYTCTVCSKALTTKHSLLEHMSLHSGQKSFTCDQC
GKYFSQKRQLKSHYRVHTGKCFNTNH

hide sequence

RefSeq Acc Id:	XP_040139124 ⟸ XM_040283190
- Peptide Label:	isoform X2
- UniProtKB:	I3MHD5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040139125 ⟸ XM_040283191
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_040139126 ⟸ XM_040283192
- Peptide Label:	isoform X5

RefSeq Acc Id:

ENSSTOP00000026398 ⟸ ENSSTOT00000042078

RefSeq Acc Id:

ENSSTOP00000010283 ⟸ ENSSTOT00000011458

Protein Domains

BTB C2H2-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000011460	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000011458.3	UniProtKB/TrEMBL
	ENSSTOT00000042078.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	BTB/POZ_dom	UniProtKB/TrEMBL
	SKP1/BTB/POZ_sf	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	Zbtb24	ENTREZGENE
PANTHER	ZINC FINGER AND BTB DOMAIN CONTAINING 24	UniProtKB/TrEMBL
	ZINC FINGER AND SCAN DOMAIN-CONTAINING	UniProtKB/TrEMBL
Pfam	BTB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PROSITE	BTB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	BTB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54695	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A287CYQ0	ENTREZGENE, UniProtKB/TrEMBL
	I3MHD5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM