Casz1 (castor zinc finger 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Casz1 (castor zinc finger 1) Ictidomys tridecemlineatus
Analyze
Symbol: Casz1
Name: castor zinc finger 1
RGD ID: 12552202
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of amacrine cell differentiation (ortholog); negative regulation of neuron differentiation (ortholog); negative regulation of retinal cone cell fate commitment (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); Prostatic Neoplasms (ortholog); Stroke (ortholog); FOUND IN chromatin (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: zinc finger protein castor homolog 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505833,993,178 - 34,009,091 (-)NCBI
SpeTri2.0NW_0049366234,478,421 - 4,503,207 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Casz1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505833,993,178 - 34,009,091 (-)NCBI
SpeTri2.0NW_0049366234,478,421 - 4,503,207 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CASZ1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl110,636,604 - 10,796,650 (-)EnsemblGRCh38hg38GRCh38
GRCh38110,636,604 - 10,796,650 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37110,696,661 - 10,856,703 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36110,619,248 - 10,779,294 (-)NCBINCBI36hg18NCBI36
Celera19,808,055 - 9,967,917 (-)NCBI
Cytogenetic Map1p36.22NCBI
HuRef19,850,697 - 10,009,398 (-)NCBIHuRef
CHM1_1110,684,386 - 10,844,453 (-)NCBICHM1_1
Casz1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394148,888,823 - 149,039,350 (+)NCBIGRCm39mm39
GRCm39 Ensembl4148,888,886 - 149,039,346 (+)Ensembl
GRCm384148,804,366 - 148,954,893 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4148,804,429 - 148,954,889 (+)EnsemblGRCm38mm10GRCm38
MGSCv374148,178,501 - 148,329,001 (+)NCBIGRCm37mm9NCBIm37
MGSCv364147,648,192 - 147,788,930 (+)NCBImm8
Celera4151,067,937 - 151,218,394 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map478.87NCBI
Casz1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25159,243,965 - 159,393,935 (+)NCBI
Rnor_6.0 Ensembl5165,724,027 - 165,774,616 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05165,625,119 - 165,777,053 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05169,374,846 - 169,427,383 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45165,979,472 - 166,030,420 (+)NCBIRGSC3.4rn4RGSC3.4
Celera5157,518,835 - 157,666,098 (+)NCBICelera
Cytogenetic Map5q36NCBI
Casz1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554862,923,239 - 2,975,835 (+)NCBIChiLan1.0ChiLan1.0
CASZ1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1110,630,416 - 10,778,567 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl110,622,519 - 10,677,091 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v019,396,936 - 9,557,100 (-)NCBIMhudiblu_PPA_v0panPan3
CASZ1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1285,194,640 - 85,218,068 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl285,176,161 - 85,232,920 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha281,769,949 - 81,812,168 (+)NCBI
ROS_Cfam_1.0285,903,378 - 85,945,601 (+)NCBI
UMICH_Zoey_3.1282,650,892 - 82,693,107 (+)NCBI
UNSW_CanFamBas_1.0283,653,486 - 83,695,698 (+)NCBI
UU_Cfam_GSD_1.0284,716,224 - 84,758,454 (+)NCBI
CASZ1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl670,879,984 - 70,995,922 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1670,876,329 - 71,029,495 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2664,810,472 - 64,828,934 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CASZ1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120120,986,451 - 121,144,311 (+)NCBI
Casz1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248182,024,553 - 2,078,708 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005334775   ⟹   XP_005334832
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049366234,478,421 - 4,500,659 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021732873   ⟹   XP_021588548
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505833,993,178 - 34,009,091 (-)NCBI
SpeTri2.0NW_0049366234,478,421 - 4,503,207 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021588548 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005334832   ⟸   XM_005334775
- Sequence:
RefSeq Acc Id: XP_021588548   ⟸   XM_021732873
- Sequence:
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009811 UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000008801 UniProtKB/TrEMBL
  ENSSTOP00000025285 UniProtKB/TrEMBL
  ENSSTOP00000031068 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009814 UniProtKB/TrEMBL
  ENSSTOT00000035132 UniProtKB/TrEMBL
  ENSSTOT00000040272 UniProtKB/TrEMBL
InterPro CASZ1 UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Casz1 ENTREZGENE
PANTHER PTHR12451 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
UniProt A0A287CVD7_ICTTR UniProtKB/TrEMBL
  A0A287DBZ8_ICTTR UniProtKB/TrEMBL
  I3ME98_ICTTR UniProtKB/TrEMBL