Tigd5 (tigger transposable element derived 5) - Rat Genome Database

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Gene: Tigd5 (tigger transposable element derived 5) Ictidomys tridecemlineatus
Analyze
Symbol: Tigd5
Name: tigger transposable element derived 5
RGD ID: 12551480
Description: ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tigger transposable element-derived protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053031,107,449 - 1,111,789 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364708,533,548 - 8,537,888 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tigd5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053031,107,449 - 1,111,789 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364708,533,548 - 8,537,888 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TIGD5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388143,597,831 - 143,603,224 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8143,597,831 - 143,603,224 (+)EnsemblGRCh38hg38GRCh38
GRCh378144,680,001 - 144,685,394 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368144,751,364 - 144,753,627 (+)NCBINCBI36Build 36hg18NCBI36
Build 348144,751,363 - 144,753,627NCBI
Celera8140,990,313 - 140,992,724 (+)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8139,914,131 - 139,933,756 (+)NCBIHuRef
CHM1_18144,720,392 - 144,722,720 (+)NCBICHM1_1
T2T-CHM13v2.08144,747,243 - 144,752,636 (+)NCBIT2T-CHM13v2.0
Tigd5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391575,781,584 - 75,786,384 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1575,781,584 - 75,786,384 (+)EnsemblGRCm39 Ensembl
GRCm381575,909,735 - 75,914,535 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1575,909,735 - 75,914,535 (+)EnsemblGRCm38mm10GRCm38
MGSCv371575,740,165 - 75,744,965 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361575,737,015 - 75,741,789 (+)NCBIMGSCv36mm8
Celera1577,410,746 - 77,415,546 (+)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1535.07NCBI
Tigd5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87109,477,438 - 109,479,957 (+)NCBIGRCr8
mRatBN7.27107,596,724 - 107,599,243 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7107,596,724 - 107,599,243 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7109,336,223 - 109,338,742 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07111,559,901 - 111,562,420 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07111,505,833 - 111,508,352 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07116,943,057 - 116,945,576 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7116,943,057 - 116,945,576 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07116,835,628 - 116,838,147 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47113,885,759 - 113,888,278 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17113,919,264 - 113,922,114 (+)NCBI
Celera7103,953,722 - 103,956,241 (+)NCBICelera
Cytogenetic Map7q34NCBI
Tigd5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554542,299,640 - 2,301,574 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554542,299,244 - 2,304,795 (+)NCBIChiLan1.0ChiLan1.0
TIGD5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27161,081,205 - 161,083,749 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18136,598,891 - 136,601,435 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08140,351,189 - 140,353,670 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18143,360,558 - 143,368,723 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8143,366,390 - 143,368,240 (+)Ensemblpanpan1.1panPan2
TIGD5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,254,327 - 37,258,521 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1337,254,327 - 37,256,279 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1337,210,812 - 37,215,009 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01337,726,146 - 37,730,341 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1337,726,146 - 37,728,098 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11337,400,416 - 37,404,611 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01337,517,387 - 37,521,579 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01337,998,621 - 38,002,814 (+)NCBIUU_Cfam_GSD_1.0
TIGD5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4967,370 - 969,283 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14964,727 - 969,391 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TIGD5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18137,818,156 - 137,820,900 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8137,818,489 - 137,820,420 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660392,069,778 - 2,075,471 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tigd5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473513,146,295 - 13,148,244 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473513,143,055 - 13,148,487 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005316348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005316348   ⟹   XP_005316405
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053031,107,449 - 1,111,789 (-)NCBI
SpeTri2.0NW_0049364708,533,548 - 8,537,888 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005316405 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3273460 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005316405   ⟸   XM_005316348
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Tigd5 ENTREZGENE