Ndufaf8 (NADH:ubiquinone oxidoreductase complex assembly factor 8) - Rat Genome Database

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Gene: Ndufaf8 (NADH:ubiquinone oxidoreductase complex assembly factor 8) Ictidomys tridecemlineatus
Analyze
Symbol: Ndufaf8
Name: NADH:ubiquinone oxidoreductase complex assembly factor 8
RGD ID: 12550645
Description: INVOLVED IN mitochondrial respiratory chain complex I assembly (inferred); ASSOCIATED WITH genetic disease (ortholog); mitochondrial metabolism disease (ortholog); nuclear type mitochondrial complex I deficiency 34 (ortholog); FOUND IN mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 8; uncharacterized protein C17orf89 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056021,459,711 - 1,462,153 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365944,949,843 - 4,952,239 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365944,949,826 - 4,952,248 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ndufaf8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056021,459,711 - 1,462,153 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365944,949,843 - 4,952,239 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365944,949,826 - 4,952,248 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFAF8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381781,239,311 - 81,241,310 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1781,239,305 - 81,241,310 (+)EnsemblGRCh38hg38GRCh38
GRCh371779,213,111 - 79,215,110 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361776,827,706 - 76,829,693 (+)NCBINCBI36Build 36hg18NCBI36
Celera1775,843,655 - 75,845,642 (+)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1774,649,430 - 74,651,417 (+)NCBIHuRef
CHM1_11779,299,054 - 79,301,041 (+)NCBICHM1_1
T2T-CHM13v2.01782,148,434 - 82,150,433 (+)NCBIT2T-CHM13v2.0
Ndufaf8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911119,989,760 - 119,991,250 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11119,989,754 - 119,991,531 (+)EnsemblGRCm39 Ensembl
GRCm3811120,098,934 - 120,100,424 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,098,928 - 120,100,705 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711119,960,248 - 119,961,738 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611119,915,024 - 119,916,737 (+)NCBIMGSCv36mm8
Celera11131,834,581 - 131,836,071 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1183.96NCBI
Ndufaf8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810105,879,908 - 105,882,059 (+)NCBIGRCr8
mRatBN7.210105,381,491 - 105,383,643 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx10110,485,886 - 110,488,049 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010109,948,917 - 109,951,080 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010105,302,038 - 105,304,189 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010109,278,712 - 109,280,863 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,278,712 - 109,280,863 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010108,876,795 - 108,878,946 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410109,510,635 - 109,512,782 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera10103,926,866 - 103,929,017 (+)NCBICelera
Cytogenetic Map10q32.3NCBI
Ndufaf8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,771,044 - 1,773,471 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555061,771,044 - 1,773,471 (-)NCBIChiLan1.0ChiLan1.0
NDUFAF8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21997,819,428 - 97,821,420 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117102,719,188 - 102,721,180 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01775,665,568 - 75,667,559 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11781,394,384 - 81,396,095 (+)NCBIpanpan1.1PanPan1.1panPan2
NDUFAF8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19851,903 - 854,005 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl9851,923 - 854,005 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha91,466,828 - 1,468,913 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.091,458,628 - 1,460,712 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl91,458,865 - 1,460,665 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.191,482,546 - 1,484,630 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.091,608,332 - 1,610,414 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.091,688,537 - 1,690,622 (-)NCBIUU_Cfam_GSD_1.0
NDUFAF8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,517,485 - 1,519,406 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1121,517,304 - 1,519,478 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2121,426,941 - 1,429,099 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103243713
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,190,114 - 73,192,088 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607744,562,906 - 44,564,929 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufaf8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480110,260,659 - 10,263,128 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480110,260,664 - 10,263,128 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005332647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000021761   ⟹   ENSSTOP00000018757
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365944,949,843 - 4,952,239 (+)Ensembl
RefSeq Acc Id: XM_005332647   ⟹   XP_005332704
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244056021,459,711 - 1,462,153 (-)NCBI
SpeTri2.0NW_0049365944,949,826 - 4,952,248 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005332704 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000018757.2
GenBank Protein KAG3268307 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005332704   ⟸   XM_005332647
- UniProtKB: I3N311 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000018757   ⟸   ENSSTOT00000021761


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000024124 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000021761.2 UniProtKB/TrEMBL
InterPro NDUFAF8 UniProtKB/TrEMBL
NCBI Gene Ndufaf8 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX ASSEMBLY FACTOR 8 UniProtKB/TrEMBL
  PTHR34561 UniProtKB/TrEMBL
PROSITE CHCH UniProtKB/TrEMBL
UniProt I3N311 ENTREZGENE, UniProtKB/TrEMBL