Nrgn (neurogranin) - Rat Genome Database

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Gene: Nrgn (neurogranin) Ictidomys tridecemlineatus
Analyze
Symbol: Nrgn
Name: neurogranin
RGD ID: 12550267
Description: ENCODES a protein that exhibits calmodulin binding (ortholog); phosphatidic acid binding (ortholog); phosphatidylinositol-3,4,5-trisphosphate binding (ortholog); INVOLVED IN associative learning (ortholog); positive regulation of long-term synaptic potentiation (ortholog); postsynaptic modulation of chemical synaptic transmission (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Chromosome 11, Partial Trisomy 11q (ortholog); Dwarfism (ortholog); FOUND IN axon (ortholog); dendrite (ortholog); dendritic spine head (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neurogranin, transcript variant X1; neurogranin, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947106,944,036 - 106,951,546 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367431,196,433 - 1,197,610 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367431,191,716 - 1,199,108 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Nrgn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947106,944,036 - 106,951,546 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367431,196,433 - 1,197,610 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367431,191,716 - 1,199,108 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NRGN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811124,739,942 - 124,747,210 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11124,739,942 - 124,747,210 (+)EnsemblGRCh38hg38GRCh38
GRCh3711124,609,838 - 124,617,106 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611124,114,952 - 124,122,309 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411124,114,951 - 124,122,309NCBI
Celera11121,770,006 - 121,777,279 (+)NCBICelera
Cytogenetic Map11q24.2NCBI
HuRef11120,552,258 - 120,559,543 (+)NCBIHuRef
CHM1_111124,495,926 - 124,503,199 (+)NCBICHM1_1
T2T-CHM13v2.011124,768,605 - 124,775,873 (+)NCBIT2T-CHM13v2.0
Nrgn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39937,455,789 - 37,464,041 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl937,455,788 - 37,464,200 (-)EnsemblGRCm39 Ensembl
GRCm38937,544,493 - 37,552,745 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl937,544,492 - 37,552,904 (-)EnsemblGRCm38mm10GRCm38
MGSCv37937,352,078 - 37,360,330 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36937,294,164 - 37,302,480 (-)NCBIMGSCv36mm8
Celera934,761,619 - 34,769,859 (-)NCBICelera
Cytogenetic Map9A4NCBI
cM Map920.78NCBI
Nrgn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8845,444,223 - 45,452,417 (-)NCBIGRCr8
mRatBN7.2837,255,462 - 37,263,659 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl837,256,930 - 37,257,516 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx841,271,907 - 41,280,115 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0839,554,961 - 39,563,169 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0837,417,880 - 37,426,088 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0840,015,049 - 40,023,193 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl840,015,049 - 40,023,193 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0840,015,873 - 40,024,017 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4838,790,596 - 38,799,077 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1838,799,361 - 38,807,843 (-)NCBI
Celera837,191,658 - 37,199,870 (+)NCBICelera
Cytogenetic Map8q22NCBI
Nrgn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541225,809,512 - 25,818,237 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541225,809,512 - 25,818,237 (+)NCBIChiLan1.0ChiLan1.0
NRGN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29125,435,369 - 125,442,680 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111126,540,227 - 126,547,550 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011119,566,934 - 119,574,248 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111123,482,202 - 123,487,969 (+)NCBIpanpan1.1PanPan1.1panPan2
NRGN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.159,673,107 - 9,679,819 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl59,673,809 - 9,679,799 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha59,717,970 - 9,724,685 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.059,612,706 - 9,619,416 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.159,684,878 - 9,691,574 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.059,655,270 - 9,661,983 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.059,691,811 - 9,698,514 (-)NCBIUU_Cfam_GSD_1.0
NRGN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl951,969,823 - 51,977,228 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1951,967,313 - 51,977,197 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2957,482,955 - 57,492,694 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NRGN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11115,888,289 - 115,895,809 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1115,894,095 - 115,894,313 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604310,222,773 - 10,230,087 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nrgn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624927753,956 - 762,662 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624927753,967 - 762,663 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000016279   ⟹   ENSSTOP00000014576
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367431,196,433 - 1,197,610 (+)Ensembl
RefSeq Acc Id: XM_005339523   ⟹   XP_005339580
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947106,944,036 - 106,951,546 (+)NCBI
SpeTri2.0NW_0049367431,191,716 - 1,199,108 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005339524   ⟹   XP_005339581
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947106,944,039 - 106,951,546 (+)NCBI
SpeTri2.0NW_0049367431,191,716 - 1,199,108 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005339580 (Get FASTA)   NCBI Sequence Viewer  
  XP_005339581 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014576.3
GenBank Protein KAG3286850 (Get FASTA)   NCBI Sequence Viewer  
  KAG3286851 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005339580   ⟸   XM_005339523
- UniProtKB: I3MR90 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005339581   ⟸   XM_005339524
- UniProtKB: I3MR90 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000014576   ⟸   ENSSTOT00000016279


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000016276 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000016279.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.190 UniProtKB/TrEMBL
InterPro IQ_motif_EF-hand-BS UniProtKB/TrEMBL
NCBI Gene Nrgn ENTREZGENE
Pfam PF00612 UniProtKB/TrEMBL
PROSITE PS50096 UniProtKB/TrEMBL
SMART SM00015 UniProtKB/TrEMBL
UniProt I3MR90 ENTREZGENE, UniProtKB/TrEMBL