Trpc1 (transient receptor potential cation channel subfamily C member 1) - Rat Genome Database

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Gene: Trpc1 (transient receptor potential cation channel subfamily C member 1) Ictidomys tridecemlineatus
Analyze
Symbol: Trpc1
Name: transient receptor potential cation channel subfamily C member 1
RGD ID: 12550249
Description: ENCODES a protein that exhibits ATPase binding (ortholog); cation channel activity (ortholog); inositol 1,4,5 trisphosphate binding (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); melanin biosynthetic process (ortholog); positive regulation of release of sequestered calcium ion into cytosol (ortholog); ASSOCIATED WITH Cardiomegaly (ortholog); Diabetic Nephropathies (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN basolateral plasma membrane (ortholog); costamere (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: short transient receptor potential channel 1; transient receptor potential cation channel subfamily C member 1, transcript variant X1; transient receptor potential cation channel subfamily C member 1, transcript variant X2; transient receptor potential cation channel subfamily C member 1, transcript variant X3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560277,600,930 - 77,678,903 (+)NCBI
SpeTri2.0NW_0049365404,340,672 - 4,417,655 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
Trpc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560277,600,930 - 77,678,903 (+)NCBI
SpeTri2.0NW_0049365404,340,672 - 4,417,655 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3142,724,034 - 142,807,888 (+)EnsemblGRCh38hg38GRCh38
GRCh383142,724,034 - 142,807,888 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373142,442,876 - 142,526,730 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363143,925,956 - 144,009,420 (+)NCBINCBI36hg18NCBI36
Build 343143,925,963 - 144,009,427NCBI
Celera3140,866,763 - 140,950,233 (+)NCBI
Cytogenetic Map3q23NCBI
HuRef3139,815,981 - 139,899,449 (+)NCBIHuRef
CHM1_13142,406,259 - 142,489,727 (+)NCBICHM1_1
Trpc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39995,587,125 - 95,632,438 (-)NCBIGRCm39mm39
GRCm39 Ensembl995,587,135 - 95,632,428 (-)Ensembl
GRCm38995,705,072 - 95,750,386 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl995,705,082 - 95,750,375 (-)EnsemblGRCm38mm10GRCm38
MGSCv37995,607,046 - 95,650,777 (-)NCBIGRCm37mm9NCBIm37
MGSCv36995,515,979 - 95,559,710 (-)NCBImm8
Celera995,273,759 - 95,317,486 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map950.2NCBI
Trpc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2896,263,322 - 96,314,197 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl896,263,329 - 96,314,276 (-)Ensembl
Rnor_6.08103,503,982 - 103,554,905 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8103,503,985 - 103,554,468 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08102,955,430 - 103,005,377 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.08102,953,764 - 102,954,177 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48100,770,833 - 100,821,420NCBIRGSC3.4rn4RGSC3.4
Celera895,710,876 - 95,759,508 (-)NCBICelera
Cytogenetic Map8q31NCBI
Trpc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555083,143,868 - 3,211,613 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555083,143,868 - 3,211,613 (-)NCBIChiLan1.0ChiLan1.0
TRPC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13147,348,776 - 147,432,332 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3147,349,056 - 147,432,332 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03139,757,408 - 139,841,006 (+)NCBIMhudiblu_PPA_v0panPan3
TRPC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12338,350,066 - 38,416,086 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2338,350,278 - 38,414,464 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2338,276,236 - 38,342,159 (+)NCBI
ROS_Cfam_1.02338,882,222 - 38,948,154 (+)NCBI
UMICH_Zoey_3.12338,564,280 - 38,643,474 (+)NCBI
UNSW_CanFamBas_1.02338,640,845 - 38,706,480 (+)NCBI
UU_Cfam_GSD_1.02338,884,935 - 38,950,859 (+)NCBI
TRPC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1383,436,395 - 83,498,422 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11383,436,343 - 83,498,419 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21391,200,922 - 91,271,298 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRPC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11547,827,295 - 47,909,207 (-)NCBI
ChlSab1.1 Ensembl1547,827,247 - 47,909,202 (-)Ensembl
Vero_WHO_p1.0NW_02366604120,761,507 - 20,843,909 (-)NCBI
Trpc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473019,307,346 - 19,375,537 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021728300   ⟹   XP_021583975
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560277,600,930 - 77,678,903 (+)NCBI
SpeTri2.0NW_0049365404,340,672 - 4,417,655 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021728301   ⟹   XP_021583976
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560277,600,932 - 77,678,903 (+)NCBI
SpeTri2.0NW_0049365404,340,674 - 4,417,654 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021728302   ⟹   XP_021583977
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560277,607,039 - 77,678,903 (+)NCBI
SpeTri2.0NW_0049365404,346,880 - 4,417,654 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_021583975   ⟸   XM_021728300
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021583976   ⟸   XM_021728301
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021583977   ⟸   XM_021728302
- Peptide Label: isoform X3
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000024889 ENTREZGENE
Ensembl Protein ENSSTOP00000015207 ENTREZGENE
  ENSSTOP00000029504 ENTREZGENE
NCBI Gene Trpc1 ENTREZGENE