Trpc6 (transient receptor potential cation channel subfamily C member 6) - Rat Genome Database

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Gene: Trpc6 (transient receptor potential cation channel subfamily C member 6) Ictidomys tridecemlineatus
Analyze
Symbol: Trpc6
Name: transient receptor potential cation channel subfamily C member 6
RGD ID: 12550177
Description: ENCODES a protein that exhibits actin binding (ortholog); actinin binding (ortholog); ATPase binding (ortholog); INVOLVED IN aging (ortholog); cellular response to hydrogen peroxide (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN endothelin signaling pathway; erythropoietin signaling pathway; ASSOCIATED WITH Albuminuria (ortholog); ataxia telangiectasia (ortholog); Cardiomegaly (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: short transient receptor potential channel 6; transient receptor potential cation channel subfamily C member 6, transcript variant X1; transient receptor potential cation channel subfamily C member 6, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494785,253,510 - 85,362,868 (-)NCBI
SpeTri2.0NW_0049365516,173,588 - 6,282,971 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Trpc6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494785,253,510 - 85,362,868 (-)NCBI
SpeTri2.0NW_0049365516,173,588 - 6,282,971 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPC6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl11101,451,564 - 101,872,562 (-)EnsemblGRCh38hg38GRCh38
GRCh3811101,451,470 - 101,584,007 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3711101,322,295 - 101,454,738 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611100,827,584 - 100,959,869 (-)NCBINCBI36hg18NCBI36
Build 3411100,827,582 - 100,959,869NCBI
Celera1198,491,501 - 98,623,915 (-)NCBI
Cytogenetic Map11q22.1NCBI
HuRef1197,256,362 - 97,388,472 (-)NCBIHuRef
CHM1_111101,205,451 - 101,337,498 (-)NCBICHM1_1
Trpc6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3998,543,868 - 8,680,753 (+)NCBIGRCm39mm39
GRCm39 Ensembl98,544,143 - 8,680,742 (+)Ensembl
GRCm3898,543,867 - 8,680,752 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl98,544,142 - 8,680,741 (+)EnsemblGRCm38mm10GRCm38
MGSCv3798,544,142 - 8,680,741 (+)NCBIGRCm37mm9NCBIm37
MGSCv3698,544,711 - 8,642,583 (+)NCBImm8
Celera95,924,518 - 6,060,945 (+)NCBICelera
Cytogenetic Map9A1NCBI
cM Map92.46NCBI
Trpc6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.285,759,387 - 5,864,000 (+)NCBI
Rnor_6.0 Ensembl86,811,543 - 6,917,535 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.086,811,543 - 6,917,534 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.086,799,564 - 6,904,623 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.485,472,515 - 5,577,537 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.185,472,514 - 5,577,536 (+)NCBI
Celera87,300,179 - 7,404,007 (+)NCBICelera
Cytogenetic Map8q11NCBI
Trpc6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554124,906,650 - 4,950,525 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554124,905,039 - 5,019,678 (-)NCBIChiLan1.0ChiLan1.0
TRPC6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11199,918,382 - 100,051,110 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1199,919,410 - 100,050,685 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01196,414,498 - 96,551,670 (-)NCBIMhudiblu_PPA_v0panPan3
TRPC6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1529,897,378 - 30,007,885 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl529,897,210 - 30,007,723 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha529,849,049 - 29,959,895 (+)NCBI
ROS_Cfam_1.0529,962,647 - 30,073,659 (+)NCBI
UMICH_Zoey_3.1530,016,217 - 30,126,413 (+)NCBI
UNSW_CanFamBas_1.0529,864,510 - 29,975,743 (+)NCBI
UU_Cfam_GSD_1.0530,042,168 - 30,153,079 (+)NCBI
TRPC6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl932,332,769 - 32,439,184 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1932,332,768 - 32,439,184 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2936,257,623 - 36,364,097 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRPC6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1192,828,546 - 92,970,224 (-)NCBI
ChlSab1.1 Ensembl192,829,253 - 92,885,086 (-)Ensembl
Vero_WHO_p1.0NW_02366604332,920,602 - 33,049,610 (+)NCBI
Trpc6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248781,321,022 - 1,469,964 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013360236   ⟹   XP_013215690
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494785,253,510 - 85,362,860 (-)NCBI
SpeTri2.0NW_0049365516,173,588 - 6,282,971 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021728970   ⟹   XP_021584645
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494785,264,775 - 85,362,860 (-)NCBI
SpeTri2.0NW_0049365516,173,588 - 6,271,614 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040285133   ⟹   XP_040141067
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494785,264,775 - 85,362,868 (-)NCBI
Protein Sequences
Protein RefSeqs XP_013215690 (Get FASTA)   NCBI Sequence Viewer  
  XP_021584645 (Get FASTA)   NCBI Sequence Viewer  
  XP_040141067 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3286413 (Get FASTA)   NCBI Sequence Viewer  
  KAG3286414 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013215690   ⟸   XM_013360236
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021584645   ⟸   XM_021728970
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040141067   ⟸   XM_040285133
- Peptide Label: isoform X1
Protein Domains
ANK_REP_REGION


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003077 ENTREZGENE
Ensembl Protein ENSSTOP00000002755 ENTREZGENE
NCBI Gene Trpc6 ENTREZGENE