Brinp1 (BMP/retinoic acid inducible neural specific 1) - Rat Genome Database

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Gene: Brinp1 (BMP/retinoic acid inducible neural specific 1) Ictidomys tridecemlineatus
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Symbol: Brinp1
Name: BMP/retinoic acid inducible neural specific 1
RGD ID: 12550018
Description: INVOLVED IN behavioral fear response (ortholog); cell population proliferation (ortholog); exploration behavior (ortholog); ASSOCIATED WITH attention deficit hyperactivity disorder (ortholog); autism spectrum disorder (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); dendrite (inferred); neuronal cell body (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BMP/retinoic acid-inducible neural-specific protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947188,077,412 - 188,250,615 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364877,845,351 - 8,019,190 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364877,845,799 - 8,019,167 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Brinp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947188,077,412 - 188,250,615 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364877,845,351 - 8,019,190 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364877,845,799 - 8,019,167 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BRINP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389119,166,629 - 119,369,435 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9119,153,458 - 119,369,435 (-)EnsemblGRCh38hg38GRCh38
GRCh379121,928,907 - 122,131,713 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369120,968,729 - 121,171,560 (-)NCBINCBI36Build 36hg18NCBI36
Build 349119,008,461 - 119,211,255NCBI
Celera992,576,710 - 92,779,541 (-)NCBICelera
Cytogenetic Map9q33.1NCBI
HuRef991,546,083 - 91,748,928 (-)NCBIHuRef
CHM1_19122,076,523 - 122,279,332 (-)NCBICHM1_1
T2T-CHM13v2.09131,360,823 - 131,563,641 (-)NCBIT2T-CHM13v2.0
Brinp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39468,679,609 - 68,872,634 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl468,679,751 - 68,872,634 (-)EnsemblGRCm39 Ensembl
GRCm38468,761,372 - 68,954,397 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl468,761,514 - 68,954,397 (-)EnsemblGRCm38mm10GRCm38
MGSCv37468,422,406 - 68,615,431 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36468,247,733 - 68,440,758 (-)NCBIMGSCv36mm8
Celera467,365,404 - 67,558,519 (-)NCBICelera
Cytogenetic Map4C1NCBI
cM Map435.03NCBI
Brinp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8587,363,621 - 87,565,580 (-)NCBIGRCr8
mRatBN7.2582,348,501 - 82,550,506 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl582,348,930 - 82,493,150 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx584,718,620 - 84,863,691 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0586,535,928 - 86,680,999 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0586,511,601 - 86,656,678 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0584,919,416 - 85,123,828 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl584,919,367 - 85,123,829 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0589,012,699 - 89,215,808 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4586,070,267 - 86,216,181 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1586,075,380 - 86,221,291 (-)NCBI
Celera581,182,670 - 81,325,632 (-)NCBICelera
Cytogenetic Map5q24NCBI
Brinp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554198,529,177 - 8,704,113 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554198,529,213 - 8,704,113 (+)NCBIChiLan1.0ChiLan1.0
BRINP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21119,974,218 - 20,177,556 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1919,976,603 - 20,179,910 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0990,296,199 - 90,499,503 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19118,646,433 - 118,848,825 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9118,646,433 - 118,792,727 (-)Ensemblpanpan1.1panPan2
BRINP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11172,625,011 - 72,794,641 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1172,628,582 - 72,764,077 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1171,035,799 - 71,205,927 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01173,753,070 - 73,925,482 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1173,755,556 - 73,925,647 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11172,279,137 - 72,449,364 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01172,301,385 - 72,471,690 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01173,036,446 - 73,206,336 (-)NCBIUU_Cfam_GSD_1.0
BRINP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1259,350,367 - 259,544,576 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11259,350,359 - 259,544,604 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21291,412,563 - 291,465,430 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BRINP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11220,189,270 - 20,387,494 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1220,189,295 - 20,388,089 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603522,594,629 - 22,792,813 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Brinp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476015,902,858 - 16,075,104 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476015,902,890 - 16,071,513 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021723473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000005389   ⟹   ENSSTOP00000004823
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364877,845,351 - 8,019,190 (-)Ensembl
RefSeq Acc Id: XM_021723473   ⟹   XP_021579148
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947188,077,412 - 188,250,615 (-)NCBI
SpeTri2.0NW_0049364877,845,799 - 8,019,167 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021579148 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000004823.2
GenBank Protein KAG3287808 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021579148   ⟸   XM_021723473
- UniProtKB: I3M5Z6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000004823   ⟸   ENSSTOT00000005389
Protein Domains
MACPF


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000005376 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000005389.3 UniProtKB/TrEMBL
InterPro BRINP UniProtKB/TrEMBL
  MACPF UniProtKB/TrEMBL
NCBI Gene Brinp1 ENTREZGENE
PANTHER BMP/RETINOIC ACID-INDUCIBLE NEURAL-SPECIFIC PROTEIN 1 UniProtKB/TrEMBL
  PTHR15564 UniProtKB/TrEMBL
Pfam BRINP UniProtKB/TrEMBL
  MACPF UniProtKB/TrEMBL
SMART MACPF UniProtKB/TrEMBL
UniProt I3M5Z6 ENTREZGENE, UniProtKB/TrEMBL