Rspry1 (ring finger and SPRY domain containing 1) - Rat Genome Database

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Gene: Rspry1 (ring finger and SPRY domain containing 1) Ictidomys tridecemlineatus
Analyze
Symbol: Rspry1
Name: ring finger and SPRY domain containing 1
RGD ID: 12549986
Description: ENCODES a protein that exhibits metal ion binding (inferred); ubiquitin-protein transferase activity (inferred); INVOLVED IN proteolysis involved in protein catabolic process (inferred); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ring finger and SPRY domain containing 1, transcript variant X1; ring finger and SPRY domain containing 1, transcript variant X2; ring finger and SPRY domain containing 1, transcript variant X3; ring finger and SPRY domain containing 1, transcript variant X4; ring finger and SPRY domain containing 1, transcript variant X5; ring finger and SPRY domain containing 1, transcript variant X6; RING finger and SPRY domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934950,250,412 - 50,294,665 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364759,294,340 - 9,340,268 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364759,294,421 - 9,338,372 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rspry1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934950,250,412 - 50,294,665 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364759,294,340 - 9,340,268 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364759,294,421 - 9,338,372 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RSPRY1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381657,186,152 - 57,240,469 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1657,186,137 - 57,240,469 (+)EnsemblGRCh38hg38GRCh38
GRCh371657,220,241 - 57,274,381 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361655,777,742 - 55,830,451 (+)NCBINCBI36Build 36hg18NCBI36
Celera1641,720,063 - 41,772,638 (+)NCBICelera
Cytogenetic Map16q13NCBI
HuRef1643,089,815 - 43,142,600 (+)NCBIHuRef
CHM1_11658,627,738 - 58,681,196 (+)NCBICHM1_1
T2T-CHM13v2.01662,982,343 - 63,036,458 (+)NCBIT2T-CHM13v2.0
Rspry1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39895,328,569 - 95,386,905 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl895,328,565 - 95,386,903 (+)EnsemblGRCm39 Ensembl
GRCm38894,601,941 - 94,660,276 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl894,601,937 - 94,660,275 (+)EnsemblGRCm38mm10GRCm38
MGSCv37897,125,841 - 97,184,176 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36897,491,109 - 97,548,982 (+)NCBIMGSCv36mm8
Celera898,935,623 - 98,988,663 (+)NCBICelera
Cytogenetic Map8C5NCBI
cM Map846.6NCBI
Rspry1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81910,358,423 - 10,408,988 (-)NCBIGRCr8
mRatBN7.21910,352,449 - 10,403,015 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1910,353,821 - 10,401,102 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1910,317,054 - 10,364,193 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01911,083,903 - 11,131,050 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01910,370,850 - 10,418,001 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01910,770,572 - 10,826,895 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1910,770,574 - 10,826,895 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01910,764,829 - 10,820,883 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41910,794,160 - 10,843,023 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11910,798,033 - 10,847,998 (-)NCBI
Celera1910,243,223 - 10,290,488 (-)NCBICelera
Cytogenetic Map19p13NCBI
Rspry1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543314,843,671 - 14,884,742 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543314,843,521 - 14,884,083 (+)NCBIChiLan1.0ChiLan1.0
RSPRY1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21866,657,710 - 66,709,685 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11672,578,499 - 72,630,456 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01637,464,158 - 37,515,481 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11656,596,843 - 56,648,085 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1656,596,851 - 56,648,085 (+)Ensemblpanpan1.1panPan2
RSPRY1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1259,139,908 - 59,186,340 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl259,141,107 - 59,186,724 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha255,768,089 - 55,814,514 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0259,678,215 - 59,724,611 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,678,192 - 59,724,597 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1256,509,629 - 56,555,927 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0257,516,879 - 57,563,294 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0258,410,958 - 58,457,378 (-)NCBIUU_Cfam_GSD_1.0
RSPRY1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl619,154,417 - 19,204,826 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1619,154,413 - 19,204,827 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2617,159,489 - 17,195,780 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RSPRY1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1543,137,942 - 43,187,327 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl543,155,963 - 43,188,765 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604733,131,948 - 33,181,777 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rspry1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474628,808,364 - 28,862,113 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474628,808,364 - 28,862,125 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000010242   ⟹   ENSSTOP00000009190
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364759,294,340 - 9,340,268 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000031153   ⟹   ENSSTOP00000030794
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364759,294,340 - 9,340,268 (+)Ensembl
RefSeq Acc Id: XM_005318219   ⟹   XP_005318276
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934950,250,412 - 50,294,664 (-)NCBI
SpeTri2.0NW_0049364759,294,421 - 9,338,372 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013366528   ⟹   XP_013221982
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934950,250,412 - 50,294,664 (-)NCBI
SpeTri2.0NW_0049364759,294,421 - 9,338,372 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013366530   ⟹   XP_013221984
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934950,250,412 - 50,294,664 (-)NCBI
SpeTri2.0NW_0049364759,294,421 - 9,338,372 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013366531   ⟹   XP_013221985
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934950,250,412 - 50,294,664 (-)NCBI
SpeTri2.0NW_0049364759,294,421 - 9,338,372 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021721429   ⟹   XP_021577104
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934950,250,412 - 50,294,434 (-)NCBI
SpeTri2.0NW_0049364759,294,629 - 9,338,372 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021721434   ⟹   XP_021577109
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934950,250,412 - 50,294,664 (-)NCBI
SpeTri2.0NW_0049364759,294,421 - 9,338,372 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040279537   ⟹   XP_040135471
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934950,250,412 - 50,294,664 (-)NCBI
RefSeq Acc Id: XM_040279538   ⟹   XP_040135472
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934950,279,691 - 50,294,665 (-)NCBI
RefSeq Acc Id: XP_013221982   ⟸   XM_013366528
- Peptide Label: isoform X1
- UniProtKB: I3MF41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005318276   ⟸   XM_005318219
- Peptide Label: isoform X1
- UniProtKB: I3MF41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013221985   ⟸   XM_013366531
- Peptide Label: isoform X1
- UniProtKB: I3MF41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013221984   ⟸   XM_013366530
- Peptide Label: isoform X1
- UniProtKB: I3MF41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021577109   ⟸   XM_021721434
- Peptide Label: isoform X1
- UniProtKB: I3MF41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021577104   ⟸   XM_021721429
- Peptide Label: isoform X1
- UniProtKB: I3MF41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040135471   ⟸   XM_040279537
- Peptide Label: isoform X1
- UniProtKB: I3MF41 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040135472   ⟸   XM_040279538
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000009190   ⟸   ENSSTOT00000010242
RefSeq Acc Id: ENSSTOP00000030794   ⟸   ENSSTOT00000031153
Protein Domains
B30.2/SPRY   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010241 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010242.3 UniProtKB/TrEMBL
  ENSSTOT00000031153.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  RNF123/RSPRY1-like UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
  SPRY_RSPRY1 UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene Rspry1 ENTREZGENE
PANTHER PTHR13363 UniProtKB/TrEMBL
  RING FINGER AND SPRY DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam SPRY UniProtKB/TrEMBL
  zf-C3HC4_3 UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF48371 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt I3MF41 ENTREZGENE, UniProtKB/TrEMBL