Stx19 (syntaxin 19) - Rat Genome Database

Name: Stx19
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Stx19 (syntaxin 19) Ictidomys tridecemlineatus

Analyze

Symbol:

Stx19

Name:

syntaxin 19

RGD ID:

12549424

Description:

ENCODES a protein that exhibits SNAP receptor activity (inferred); SNARE binding (inferred); INVOLVED IN intracellular protein transport (inferred); membrane fusion (inferred); synaptic vesicle fusion to presynaptic active zone membrane (inferred); ASSOCIATED WITH autosomal recessive thrombophilia due to protein S deficiency (ortholog); genetic disease (ortholog); Joubert syndrome 8 (ortholog); FOUND IN membrane (inferred); presynaptic active zone membrane (inferred); SNARE complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

syntaxin-19

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	STX19 (syntaxin 19)	NCBI	Ortholog
Mus musculus (house mouse):	Stx19 (syntaxin 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Stx19 (syntaxin 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Stx19 (syntaxin 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	STX19 (syntaxin 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	STX19 (syntaxin 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	STX19 (syntaxin 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	STX19 (syntaxin 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Stx19 (syntaxin 19)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	155,368,450 - 155,369,359 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936666	146,314 - 154,950 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936666	145,946 - 147,292 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive thrombophilia due to protein S deficiency (ISO)

genetic disease (ISO)

Joubert syndrome 8 (ISO)

protein S deficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular protein transport (IEA)

membrane fusion (IEA)

synaptic vesicle fusion to presynaptic active zone membrane (IEA)

vesicle docking (IEA)

vesicle-mediated transport (IEA)

Cellular Component

membrane (IEA)

presynaptic active zone membrane (IEA)

SNARE complex (IEA)

synaptic vesicle (IEA)

Molecular Function

protein binding (ISO)

SNAP receptor activity (IEA)

SNARE binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Stx19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	155,368,450 - 155,369,359 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936666	146,314 - 154,950 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936666	145,946 - 147,292 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STX19
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	94,014,365 - 94,028,597 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	94,014,365 - 94,028,597 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	93,733,209 - 93,747,441 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	95,215,903 - 95,230,144 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	92,116,939 - 92,131,179 (-)	NCBI		Celera
Cytogenetic Map	3	q11.2	NCBI
HuRef	3	91,095,915 - 91,110,158 (-)	NCBI		HuRef
CHM1_1	3	93,696,301 - 93,710,542 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	96,712,494 - 96,726,726 (-)	NCBI		T2T-CHM13v2.0

Stx19
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	62,635,039 - 62,643,085 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	62,635,039 - 62,644,709 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	62,814,676 - 62,822,722 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	62,814,676 - 62,824,346 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	62,814,502 - 62,822,548 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	62,756,932 - 62,764,978 (+)	NCBI		MGSCv36	mm8
Celera	16	63,123,377 - 63,131,418 (+)	NCBI		Celera
Cytogenetic Map	16	C1.3	NCBI
cM Map	16	36.43	NCBI

Stx19
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	13,619,436 - 13,624,634 (+)	NCBI		GRCr8
mRatBN7.2	11	172,855 - 178,053 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	171,395 - 179,191 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	8,769,008 - 8,774,204 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	1,562,267 - 1,567,463 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	667,048 - 672,244 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	1,145,002 - 1,149,978 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	7	1,133,989 - 1,138,965 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	13	182,296 - 187,494 (+)	NCBI		Celera
Cytogenetic Map	11	p12	NCBI

Stx19
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	3,397,284 - 3,437,421 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955407	3,397,284 - 3,437,421 (+)	NCBI	ChiLan1.0	ChiLan1.0

STX19
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	91,925,852 - 91,974,898 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	91,929,934 - 91,945,006 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	91,079,351 - 91,093,741 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	97,759,197 - 97,773,498 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	97,759,213 - 97,760,097 (-)	Ensembl	panpan1.1		panPan2

STX19
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	1,726,019 - 1,736,949 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	33	1,726,695 - 1,727,579 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	33	1,903,226 - 1,916,301 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	33	1,822,874 - 1,835,972 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	33	1,826,083 - 1,826,967 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	33	1,731,883 - 1,744,958 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	33	1,767,183 - 1,780,253 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	33	1,992,040 - 2,005,119 (-)	NCBI		UU_Cfam_GSD_1.0

STX19
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	165,867,924 - 165,874,123 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	165,858,563 - 165,872,678 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	176,541,458 - 176,557,579 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

STX19
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	86,673,139 - 86,688,288 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	86,673,654 - 86,691,972 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	79,994,530 - 80,009,021 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Stx19
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624789	6,744,858 - 6,756,127 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624789	6,740,514 - 6,757,694 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021734211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000028887 ⟹ ENSSTOP00000022672

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936666	146,314 - 154,950 (-)	Ensembl

RefSeq Acc Id:

XM_021734211 ⟹ XP_021589886

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	155,368,450 - 155,369,359 (+)	NCBI
SpeTri2.0	NW_004936666	145,946 - 147,292 (-)	NCBI

Sequence:

show sequence

TTTTGCTGGGAGAGAGGACAGCTATGTCAAGTCAAATTTCTTTTTAACATAATCATTCTTGCTT
CTTAGCAGGAAAGGGAAGATGAAAGACCGACTTCAAGAACTAAAGCAAAGAACAAAGGAAATTG
AACTTTACAGAGACAATCATGTGTTAAGTTCGGAAACAGAGGAAAAAGGGGTGTTTGTGCAGCA
AGCTGTTATTTATGAGAGAGAGCCTGTAGCTGAGAGACACCTACATGAGATCCAAAAACTACAG
GAGAATATTAAGAATTTGGCAGATGATGTGCAAAGATTTGGACAGCATCAAAAAAGTCTGATGG
CTTCAATGAGAAGGTTTAGCCTCCTTAAGAGAGAGTCTAGCATTACAAAGGAGATAAAAGCCCA
AGCAGAACACATTAACAGAGGTTTGGGTGATTTAGTTAAAGAAGTTAAAAAGTCAGAGGTTGAA
AATGGTCCATCGTCAGTCATCACAAGGATACTTAAATCTCAGCATGCTGCAATGTTCCGACATT
TTCAACAAACTATGTTTATATACAATGACACAATAGCTGCAAAGCAAGAGAAGTGCAAGGCATT
TATTTTTCGTCAACTTGAAGTTGCTGAAAAAGAGGTACCTGAAGAAGAGGTAAATGATATGCTT
CACCAAGGAAAATGGGAAGTTTTTAATGAAAGCTTACTCACAGAAATCAATATCACTAAAGCAC
AACTCTCAGAGATTGAACAAAGACATAAGGAACTTGTTAATTTGGAAAACCAAGTGAAGGATTT
ACGGGATCTTTTCATTCAGATATCTCTTTTAGTAGAGGAACAAGGAGAAAGCATCAATAATATT
GAAATGATAGTAAATAGTACAAAAGATTATGTTAATAATACTAAAGAGAAATTTGGACTAGCAG
TAAAATACAAAAAAAGAAATCCATGCAGGATACTGTGCTGTTGGTGCTGTCCATGCCGTGGTTC
AAAATAAAGAAACTATTTTTAAAATTTTTCCATATTTAAGCTGAAGGATGTATTTCAATGTCTG
TTTTTCATTGTTTCATGGATCCACACTTTATCACTGTTAAGTCATAATTTTCCCCTTTAACACC
CACTACTATTACAGAGACTCCTGAAGTCAGTGACATAAGTCTTTAAATTTTATTAATCTGAAAA
CAGTATGAATACCTTCAACTCACAGGTTAACAATAAAAGTTAGATGAATAAATTGAAGTTTCTG
ATCATGTACTAAATTCTACTACACATTTTTCCTAACTTCTAATGCTTTAACAAGATGAATGTTC
AATTAAGTGATGACCATGTAAGCAATACATTTGGCTATTTGAGACTATTTGGTAATTGAGAATT
ATA

hide sequence

Protein Sequences


Protein RefSeqs	XP_021589886	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000022672.1
GenBank Protein	KAG3271682	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_021589886 ⟸ XM_021734211

- UniProtKB:

I3NE75 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKDRLQELKQRTKEIELYRDNHVLSSETEEKGVFVQQAVIYEREPVAERHLHEIQKLQENIKNL
ADDVQRFGQHQKSLMASMRRFSLLKRESSITKEIKAQAEHINRGLGDLVKEVKKSEVENGPSSV
ITRILKSQHAAMFRHFQQTMFIYNDTIAAKQEKCKAFIFRQLEVAEKEVPEEEVNDMLHQGKWE
VFNESLLTEINITKAQLSEIEQRHKELVNLENQVKDLRDLFIQISLLVEEQGESINNIEMIVNS
TKDYVNNTKEKFGLAVKYKKRNPCRILCCWCCPCRGSK

hide sequence

RefSeq Acc Id:

ENSSTOP00000022672 ⟸ ENSSTOT00000028887

Protein Domains

t-SNARE coiled-coil homology

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000022803	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000028887.2	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.110	UniProtKB/TrEMBL
	1.20.58.70	UniProtKB/TrEMBL
InterPro	SNARE	UniProtKB/TrEMBL
	Syntaxin	UniProtKB/TrEMBL
	Syntaxin/epimorphin_CS	UniProtKB/TrEMBL
	Syntaxin_N	UniProtKB/TrEMBL
	T_SNARE_dom	UniProtKB/TrEMBL
NCBI Gene	Stx19	ENTREZGENE
PANTHER	PTHR19957	UniProtKB/TrEMBL
	PTHR19957:SF29	UniProtKB/TrEMBL
Pfam	Syntaxin	UniProtKB/TrEMBL
PROSITE	SYNTAXIN	UniProtKB/TrEMBL
	T_SNARE	UniProtKB/TrEMBL
SMART	SynN	UniProtKB/TrEMBL
	t_SNARE	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47661	UniProtKB/TrEMBL
UniProt	I3NE75	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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